Literature DB >> 25517143

Connecting the dots: the effects of macromolecular crowding on cell physiology.

Márcio A Mourão1, Joe B Hakim2, Santiago Schnell3.   

Abstract

The physicochemical properties of cellular environments with a high macromolecular content have been systematically characterized to explain differences observed in the diffusion coefficients, kinetics parameters, and thermodynamic properties of proteins inside and outside of cells. However, much less attention has been given to the effects of macromolecular crowding on cell physiology. Here, we review recent findings that shed some light on the role of crowding in various cellular processes, such as reduction of biochemical activities, structural reorganization of the cytoplasm, cytoplasm fluidity, and cellular dormancy. We conclude by presenting some unresolved problems that require the attention of biophysicists, biochemists, and cell physiologists. Although it is still underappreciated, macromolecular crowding plays a critical role in life as we know it.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25517143      PMCID: PMC4269789          DOI: 10.1016/j.bpj.2014.10.051

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  44 in total

1.  Effect of dextran on protein stability and conformation attributed to macromolecular crowding.

Authors:  Kenji Sasahara; Peter McPhie; Allen P Minton
Journal:  J Mol Biol       Date:  2003-02-28       Impact factor: 5.469

2.  Model for the role of macromolecular crowding in regulation of cellular volume.

Authors:  A P Minton; G C Colclasure; J C Parker
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-01       Impact factor: 11.205

Review 3.  Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules.

Authors:  Akihiro Kusumi; Chieko Nakada; Ken Ritchie; Kotono Murase; Kenichi Suzuki; Hideji Murakoshi; Rinshi S Kasai; Junko Kondo; Takahiro Fujiwara
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

4.  Molecular crowding limits translation and cell growth.

Authors:  Stefan Klumpp; Matthew Scott; Steen Pedersen; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

5.  Universal behavior of the osmotically compressed cell and its analogy to the colloidal glass transition.

Authors:  E H Zhou; X Trepat; C Y Park; G Lenormand; M N Oliver; S M Mijailovich; C Hardin; D A Weitz; J P Butler; J J Fredberg
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-11       Impact factor: 11.205

6.  Actin bodies in yeast quiescent cells: an immediately available actin reserve?

Authors:  Isabelle Sagot; Benoît Pinson; Bénédicte Salin; Bertrand Daignan-Fornier
Journal:  Mol Biol Cell       Date:  2006-08-16       Impact factor: 4.138

7.  Protein diffusion in the periplasm of E. coli under osmotic stress.

Authors:  Kem A Sochacki; Irina A Shkel; M Thomas Record; James C Weisshaar
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

8.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

9.  Intracellular pH regulation by Na(+)/H(+) exchange requires phosphatidylinositol 4,5-bisphosphate.

Authors:  O Aharonovitz; H C Zaun; T Balla; J D York; J Orlowski; S Grinstein
Journal:  J Cell Biol       Date:  2000-07-10       Impact factor: 10.539

10.  Impact of macromolecular crowding on DNA replication.

Authors:  Barak Akabayov; Sabine R Akabayov; Seung-Joo Lee; Gerhard Wagner; Charles C Richardson
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  43 in total

1.  Physical Modeling of Dynamic Coupling between Chromosomal Loci.

Authors:  Thomas J Lampo; Andrew S Kennard; Andrew J Spakowitz
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

2.  Homolog comparisons further reconcile in vitro and in vivo correlations of protein activities by revealing over-looked physiological factors.

Authors:  Sudheer Tungtur; Kristen M Schwingen; Joshua J Riepe; Chamitha J Weeramange; Liskin Swint-Kruse
Journal:  Protein Sci       Date:  2019-08-09       Impact factor: 6.725

Review 3.  Specific genomic cues regulate Cajal body assembly.

Authors:  Iain A Sawyer; Gordon L Hager; Miroslav Dundr
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

Review 4.  Do Cellular Condensates Accelerate Biochemical Reactions? Lessons from Microdroplet Chemistry.

Authors:  Wylie Stroberg; Santiago Schnell
Journal:  Biophys J       Date:  2018-07-03       Impact factor: 4.033

Review 5.  Cellular quiescence in budding yeast.

Authors:  Siyu Sun; David Gresham
Journal:  Yeast       Date:  2021-01-25       Impact factor: 3.239

6.  Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics.

Authors:  Luciano A Abriata; Enrico Spiga; Matteo Dal Peraro
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

Review 7.  Molecular simulations of cellular processes.

Authors:  Fabio Trovato; Giordano Fumagalli
Journal:  Biophys Rev       Date:  2017-11-28

8.  Thermodynamics of Macromolecular Association in Heterogeneous Crowding Environments: Theoretical and Simulation Studies with a Simplified Model.

Authors:  Tadashi Ando; Isseki Yu; Michael Feig; Yuji Sugita
Journal:  J Phys Chem B       Date:  2016-11-15       Impact factor: 2.991

9.  Effects of soft interactions and bound mobility on diffusion in crowded environments: a model of sticky and slippery obstacles.

Authors:  Michael W Stefferson; Samantha L Norris; Franck J Vernerey; Meredith D Betterton; Loren E Hough
Journal:  Phys Biol       Date:  2017-06-29       Impact factor: 2.583

10.  Crowder-Induced Conformational Ensemble Shift in Escherichia coli Prolyl-tRNA Synthetase.

Authors:  Lauren M Adams; Ryan J Andrews; Quin H Hu; Heidi L Schmit; Sanchita Hati; Sudeep Bhattacharyya
Journal:  Biophys J       Date:  2019-08-31       Impact factor: 4.033

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