Literature DB >> 29972809

Do Cellular Condensates Accelerate Biochemical Reactions? Lessons from Microdroplet Chemistry.

Wylie Stroberg1, Santiago Schnell2.   

Abstract

Cellular condensates-phase-separated concentrates of proteins and nucleic acids-provide organizational structure for biochemistry that is distinct from membrane-bound compartments. It has been suggested that one major function of cellular condensates is to accelerate biochemical processes that are normally slow or thermodynamically unfavorable. Yet, the mechanisms leading to increased reaction rates within cellular condensates remain poorly understood. In this article, we highlight recent advances in microdroplet chemistry that accelerate reaction rates by many orders of magnitude as compared to bulk and suggest that similar mechanisms may also affect reaction kinetics in cellular condensates.
Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2018        PMID: 29972809      PMCID: PMC6035290          DOI: 10.1016/j.bpj.2018.05.023

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  68 in total

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2.  Ion formation from charged droplets: Roles of geometry, energy, and time.

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3.  Monte Carlo simulations of enzymatic reactions in crowded media. Effect of the enzyme-obstacle relative size.

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Journal:  Math Biosci       Date:  2014-03-26       Impact factor: 2.144

Review 4.  Macromolecular crowding and its consequences.

Authors:  H O Johansson; D E Brooks; C A Haynes
Journal:  Int Rev Cytol       Date:  2000

5.  Syntheses of Isoquinoline and Substituted Quinolines in Charged Microdroplets.

Authors:  Shibdas Banerjee; Richard N Zare
Journal:  Angew Chem Int Ed Engl       Date:  2015-10-09       Impact factor: 15.336

6.  Colocalization and Sequential Enzyme Activity in Aqueous Biphasic Systems: Experiments and Modeling.

Authors:  Bradley W Davis; William M Aumiller; Negar Hashemian; Songon An; Antonios Armaou; Christine D Keating
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

Review 7.  Principles and Properties of Stress Granules.

Authors:  David S W Protter; Roy Parker
Journal:  Trends Cell Biol       Date:  2016-06-09       Impact factor: 20.808

8.  In vivo kinetics of Cajal body components.

Authors:  Miroslav Dundr; Michael D Hebert; Tatiana S Karpova; David Stanek; Hongzi Xu; Karl B Shpargel; U Thomas Meier; Karla M Neugebauer; A Gregory Matera; Tom Misteli
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9.  ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function.

Authors:  Tetsuro Murakami; Seema Qamar; Julie Qiaojin Lin; Gabriele S Kaminski Schierle; Eric Rees; Akinori Miyashita; Ana R Costa; Roger B Dodd; Fiona T S Chan; Claire H Michel; Deborah Kronenberg-Versteeg; Yi Li; Seung-Pil Yang; Yosuke Wakutani; William Meadows; Rodylyn Rose Ferry; Liang Dong; Gian Gaetano Tartaglia; Giorgio Favrin; Wen-Lang Lin; Dennis W Dickson; Mei Zhen; David Ron; Gerold Schmitt-Ulms; Paul E Fraser; Neil A Shneider; Christine Holt; Michele Vendruscolo; Clemens F Kaminski; Peter St George-Hyslop
Journal:  Neuron       Date:  2015-10-29       Impact factor: 17.173

Review 10.  P-Bodies: Composition, Properties, and Functions.

Authors:  Yang Luo; Zhenkun Na; Sarah A Slavoff
Journal:  Biochemistry       Date:  2018-01-30       Impact factor: 3.162

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  12 in total

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Journal:  J Biol Chem       Date:  2018-07-25       Impact factor: 5.157

2.  CDK-Regulated Phase Separation Seeded by Histone Genes Ensures Precise Growth and Function of Histone Locus Bodies.

Authors:  Woonyung Hur; James P Kemp; Marco Tarzia; Victoria E Deneke; William F Marzluff; Robert J Duronio; Stefano Di Talia
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Review 3.  Genome organization around nuclear speckles.

Authors:  Yu Chen; Andrew S Belmont
Journal:  Curr Opin Genet Dev       Date:  2019-08-05       Impact factor: 5.578

4.  Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids.

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

5.  A composition-dependent molecular clutch between T cell signaling condensates and actin.

Authors:  Jonathon A Ditlev; Anthony R Vega; Darius Vasco Köster; Xiaolei Su; Tomomi Tani; Ashley M Lakoduk; Ronald D Vale; Satyajit Mayor; Khuloud Jaqaman; Michael K Rosen
Journal:  Elife       Date:  2019-07-03       Impact factor: 8.140

6.  Mechanistic dissection of increased enzymatic rate in a phase-separated compartment.

Authors:  William Peeples; Michael K Rosen
Journal:  Nat Chem Biol       Date:  2021-05-25       Impact factor: 15.040

7.  High-yield gram-scale organic synthesis using accelerated microdroplet/thin film reactions with solvent recycling.

Authors:  Honggang Nie; Zhenwei Wei; Lingqi Qiu; Xingshuo Chen; Dylan T Holden; R Graham Cooks
Journal:  Chem Sci       Date:  2020-01-29       Impact factor: 9.825

Review 8.  The Nucleolus: A Multiphase Condensate Balancing Ribosome Synthesis and Translational Capacity in Health, Aging and Ribosomopathies.

Authors:  Carl C Correll; Jiri Bartek; Miroslav Dundr
Journal:  Cells       Date:  2019-08-10       Impact factor: 6.600

9.  Ultrafast enzymatic digestion of proteins by microdroplet mass spectrometry.

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Journal:  Nat Commun       Date:  2020-02-26       Impact factor: 14.919

10.  Liquid-liquid phase separation driven compartmentalization of reactive nucleoplasm.

Authors:  Rabia Laghmach; Davit A Potoyan
Journal:  Phys Biol       Date:  2021-01-07       Impact factor: 2.583

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