Literature DB >> 27715441

Specific genomic cues regulate Cajal body assembly.

Iain A Sawyer1,2, Gordon L Hager2, Miroslav Dundr1.   

Abstract

The assembly of specialized sub-nuclear microenvironments known as nuclear bodies (NBs) is important for promoting efficient nuclear function. In particular, the Cajal body (CB), a prominent NB that facilitates spliceosomal snRNP biogenesis, assembles in response to genomic cues. Here, we detail the factors that regulate CB assembly and structural maintenance. These include the importance of transcription at nucleating gene loci, the grouping of these genes on human chromosomes 1, 6 and 17, as well as cell cycle and biochemical regulation of CB protein function. We also speculate on the correlation between CB formation and RNA splicing levels in neurons and cancer. The timing and location of these specific molecular events is critical to CB assembly and its contribution to genome function. However, further work is required to explore the emerging biophysical characteristics of CB assembly and the impact upon subsequent genome reorganization.

Entities:  

Keywords:  Cajal bodies; RNA splicing; chromatin; coilin; genome organization; histone locus bodies; nuclear bodies; oncogenesis; phase separation; spliceosomal snRNPs

Mesh:

Substances:

Year:  2016        PMID: 27715441      PMCID: PMC5519236          DOI: 10.1080/15476286.2016.1243648

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  150 in total

1.  Replication-dependent histone gene expression is related to Cajal body (CB) association but does not require sustained CB contact.

Authors:  L S Shopland; M Byron; J L Stein; J B Lian; G S Stein; J B Lawrence
Journal:  Mol Biol Cell       Date:  2001-03       Impact factor: 4.138

Review 2.  Nuclear bodies: multifaceted subdomains of the interchromatin space.

Authors:  A G Matera
Journal:  Trends Cell Biol       Date:  1999-08       Impact factor: 20.808

3.  Coiled bodies are predisposed to a spatial association with genes that contain snoRNA sequences in their introns.

Authors:  W Schul; B Adelaar; R van Driel; L de Jong
Journal:  J Cell Biochem       Date:  1999-12-01       Impact factor: 4.429

4.  Association of snRNA genes with coiled bodies is mediated by nascent snRNA transcripts.

Authors:  M R Frey; A D Bailey; A M Weiner; A G Matera
Journal:  Curr Biol       Date:  1999-02-11       Impact factor: 10.834

5.  Coiled bodies preferentially associate with U4, U11, and U12 small nuclear RNA genes in interphase HeLa cells but not with U6 and U7 genes.

Authors:  E Y Jacobs; M R Frey; W Wu; T C Ingledue; T C Gebuhr; L Gao; W F Marzluff; A G Matera
Journal:  Mol Biol Cell       Date:  1999-05       Impact factor: 4.138

Review 6.  Cajal bodies: the first 100 years.

Authors:  J G Gall
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

7.  Self-association of coilin reveals a common theme in nuclear body localization.

Authors:  M D Hebert; A G Matera
Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

8.  Interactions of U2 gene loci and their nuclear transcripts with Cajal (coiled) bodies: evidence for PreU2 within Cajal bodies.

Authors:  K P Smith; J B Lawrence
Journal:  Mol Biol Cell       Date:  2000-09       Impact factor: 4.138

9.  Neuronal body size correlates with the number of nucleoli and Cajal bodies, and with the organization of the splicing machinery in rat trigeminal ganglion neurons.

Authors:  E Pena; M T Berciano; R Fernandez; J L Ojeda; M Lafarga
Journal:  J Comp Neurol       Date:  2001-02-05       Impact factor: 3.215

10.  In vivo analysis of Cajal body movement, separation, and joining in live human cells.

Authors:  M Platani; I Goldberg; J R Swedlow; A I Lamond
Journal:  J Cell Biol       Date:  2000-12-25       Impact factor: 10.539

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  15 in total

Review 1.  Chromatin loops and causality loops: the influence of RNA upon spatial nuclear architecture.

Authors:  Iain A Sawyer; Miroslav Dundr
Journal:  Chromosoma       Date:  2017-06-07       Impact factor: 4.316

Review 2.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

Review 3.  Cajal body function in genome organization and transcriptome diversity.

Authors:  Iain A Sawyer; David Sturgill; Myong-Hee Sung; Gordon L Hager; Miroslav Dundr
Journal:  Bioessays       Date:  2016-10-21       Impact factor: 4.345

4.  Glomerulosomes: morphologically distinct nuclear organelles of unknown nature.

Authors:  Dmitry S Bogolyubov; Lyudmila V Chistyakova; Andrew V Goodkov
Journal:  Protoplasma       Date:  2022-02-01       Impact factor: 3.186

5.  Nusinersen ameliorates motor function and prevents motoneuron Cajal body disassembly and abnormal poly(A) RNA distribution in a SMA mouse model.

Authors:  María T Berciano; Alba Puente-Bedia; Almudena Medina-Samamé; José C Rodríguez-Rey; Jordi Calderó; Miguel Lafarga; Olga Tapia
Journal:  Sci Rep       Date:  2020-07-01       Impact factor: 4.379

6.  The Small-Molecule Flunarizine in Spinal Muscular Atrophy Patient Fibroblasts Impacts on the Gemin Components of the SMN Complex and TDP43, an RNA-Binding Protein Relevant to Motor Neuron Diseases.

Authors:  Delphine Sapaly; Perrine Delers; Jennifer Coridon; Badih Salman; Franck Letourneur; Florent Dumont; Suzie Lefebvre
Journal:  Front Mol Biosci       Date:  2020-04-17

Review 7.  Polyphasic linkage and the impact of ligand binding on the regulation of biomolecular condensates.

Authors:  Kiersten M Ruff; Furqan Dar; Rohit V Pappu
Journal:  Biophys Rev       Date:  2021-06-15

8.  The small Cajal body-specific RNA 15 (SCARNA15) directs p53 and redox homeostasis via selective splicing in cancer cells.

Authors:  Giulia Beneventi; Roberto Munita; Phuong Cao Thi Ngoc; Magdalena Madej; Maciej Cieśla; Sowndarya Muthukumar; Nicolai Krogh; Henrik Nielsen; Vinay Swaminathan; Cristian Bellodi
Journal:  NAR Cancer       Date:  2021-07-09

9.  Integrator subunit 4 is a 'Symplekin-like' scaffold that associates with INTS9/11 to form the Integrator cleavage module.

Authors:  Todd R Albrecht; Sergey P Shevtsov; Yixuan Wu; Lauren G Mascibroda; Natoya J Peart; Kai-Lieh Huang; Iain A Sawyer; Liang Tong; Miroslav Dundr; Eric J Wagner
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

Review 10.  Identification of Genomic Loci Responsible for the Formation of Nuclear Domains Using Lampbrush Chromosomes.

Authors:  Alla Krasikova; Tatiana Kulikova
Journal:  Noncoding RNA       Date:  2019-12-25
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