Literature DB >> 23778093

Three-dimensional single-particle imaging using angular correlations from X-ray laser data.

Haiguang Liu1, Billy K Poon, Dilano K Saldin, John C H Spence, Peter H Zwart.   

Abstract

Femtosecond X-ray pulses from X-ray free-electron laser sources make it feasible to conduct room-temperature solution scattering experiments far below molecular rotational diffusion timescales. Owing to the ultra-short duration of each snapshot in these fluctuation scattering experiments, the particles are effectively frozen in space during the X-ray exposure. In contrast to standard small-angle scattering experiments, the resulting scattering patterns are anisotropic. The intensity fluctuations observed in the diffraction images can be used to obtain structural information embedded in the average angular correlation of the Fourier transform of the scattering species, of which standard small-angle scattering data are a subset. The additional information contained in the data of these fluctuation scattering experiments can be used to determine the structure of macromolecules in solution without imposing symmetry or spatial restraints during model reconstruction, reducing ambiguities normally observed in solution scattering studies. In this communication, a method that utilizes fluctuation X-ray scattering data to determine low-resolution solution structures is presented. The method is validated with theoretical data calculated from several representative molecules and applied to the reconstruction of nanoparticles from experimental data collected at the Linac Coherent Light Source.

Keywords:  femtosecond X-ray diffraction; fluctuation X-ray scattering; structure; three-dimensional Zernike polynomials

Mesh:

Substances:

Year:  2013        PMID: 23778093     DOI: 10.1107/S0108767313006016

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  14 in total

1.  Iterative phasing for fluctuation X-ray scattering.

Authors:  Jeffrey J Donatelli; Peter H Zwart; James A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

Review 2.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

Review 3.  Understanding pre-mRNA splicing through crystallography.

Authors:  Sara Espinosa; Lingdi Zhang; Xueni Li; Rui Zhao
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Review 4.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

5.  Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities.

Authors:  Tamir Bendory; Alberto Bartesaghi; Amit Singer
Journal:  IEEE Signal Process Mag       Date:  2020-02-27       Impact factor: 12.551

6.  Determining Complex Structures using Docking Method with Single Particle Scattering Data.

Authors:  Hongxiao Wang; Haiguang Liu
Journal:  Front Mol Biosci       Date:  2017-04-25

7.  Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Authors:  Ruslan P Kurta; Jeffrey J Donatelli; Chun Hong Yoon; Peter Berntsen; Johan Bielecki; Benedikt J Daurer; Hasan DeMirci; Petra Fromme; Max Felix Hantke; Filipe R N C Maia; Anna Munke; Carl Nettelblad; Kanupriya Pande; Hemanth K N Reddy; Jonas A Sellberg; Raymond G Sierra; Martin Svenda; Gijs van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier; Andrew Aquila; Peter H Zwart; Adrian P Mancuso
Journal:  Phys Rev Lett       Date:  2017-10-12       Impact factor: 9.161

8.  Observation of correlated X-ray scattering at atomic resolution.

Authors:  Derek Mendez; Thomas J Lane; Jongmin Sung; Jonas Sellberg; Clément Levard; Herschel Watkins; Aina E Cohen; Michael Soltis; Shirley Sutton; James Spudich; Vijay Pande; Daniel Ratner; Sebastian Doniach
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

9.  Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise.

Authors:  K Pande; M Schmidt; P Schwander; D K Saldin
Journal:  Struct Dyn       Date:  2015-04-10       Impact factor: 2.920

10.  Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer.

Authors:  Marius Schmidt; Dilano K Saldin
Journal:  Struct Dyn       Date:  2014-03-27       Impact factor: 2.920

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