Literature DB >> 25512341

The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters.

Xichen Bao1, Haitao Wu2, Xihua Zhu2, Xiangpeng Guo1, Andrew P Hutchins3, Zhiwei Luo1, Hong Song3, Yongqiang Chen3, Keyu Lai3, Menghui Yin4, Lingxiao Xu5, Liang Zhou6, Jiekai Chen3, Dongye Wang7, Baoming Qin8, Jon Frampton9, Hung-Fat Tse10, Duanqing Pei11, Huating Wang12, Biliang Zhang4, Miguel A Esteban13.   

Abstract

Recent studies have boosted our understanding of long noncoding RNAs (lncRNAs) in numerous biological processes, but few have examined their roles in somatic cell reprogramming. Through expression profiling and functional screening, we have identified that the large intergenic noncoding RNA p21 (lincRNA-p21) impairs reprogramming. Notably, lincRNA-p21 is induced by p53 but does not promote apoptosis or cell senescence in reprogramming. Instead, lincRNA-p21 associates with the H3K9 methyltransferase SETDB1 and the maintenance DNA methyltransferase DNMT1, which is facilitated by the RNA-binding protein HNRNPK. Consequently, lincRNA-p21 prevents reprogramming by sustaining H3K9me3 and/or CpG methylation at pluripotency gene promoters. Our results provide insight into the role of lncRNAs in reprogramming and establish a novel link between p53 and heterochromatin regulation.

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Year:  2014        PMID: 25512341      PMCID: PMC4650593          DOI: 10.1038/cr.2014.165

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  36 in total

1.  H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs.

Authors:  Jiekai Chen; He Liu; Jing Liu; Jing Qi; Bei Wei; Jiaqi Yang; Hanquan Liang; You Chen; Jing Chen; Yaran Wu; Lin Guo; Jieying Zhu; Xiangjie Zhao; Tianran Peng; Yixin Zhang; Shen Chen; Xuejia Li; Dongwei Li; Tao Wang; Duanqing Pei
Journal:  Nat Genet       Date:  2012-12-02       Impact factor: 38.330

2.  Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal.

Authors:  Yue Wang; Zhenyu Xu; Junfeng Jiang; Chen Xu; Jiuhong Kang; Lei Xiao; Minjuan Wu; Jun Xiong; Xiaocan Guo; Houqi Liu
Journal:  Dev Cell       Date:  2013-03-28       Impact factor: 12.270

3.  Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1.

Authors:  Faizaan Mohammad; Tanmoy Mondal; Natalia Guseva; Gaurav Kumar Pandey; Chandrasekhar Kanduri
Journal:  Development       Date:  2010-06-23       Impact factor: 6.868

4.  Long noncoding RNA as modular scaffold of histone modification complexes.

Authors:  Miao-Chih Tsai; Ohad Manor; Yue Wan; Nima Mosammaparast; Jordon K Wang; Fei Lan; Yang Shi; Eran Segal; Howard Y Chang
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

5.  Protein tyrosine phosphatase 1B is a regulator of the interleukin-10-induced transcriptional program in macrophages.

Authors:  Kelly A Pike; Andrew P Hutchins; Valerie Vinette; Jean-François Théberge; Laurent Sabbagh; Michel L Tremblay; Diego Miranda-Saavedra
Journal:  Sci Signal       Date:  2014-05-06       Impact factor: 8.192

Review 6.  Genetic and epigenetic variations in iPSCs: potential causes and implications for application.

Authors:  Gaoyang Liang; Yi Zhang
Journal:  Cell Stem Cell       Date:  2013-08-01       Impact factor: 24.633

7.  An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.

Authors:  Nianwei Lin; Kung-Yen Chang; Zhonghan Li; Keith Gates; Zacharia A Rana; Jason Dang; Danhua Zhang; Tianxu Han; Chao-Shun Yang; Thomas J Cunningham; Steven R Head; Gregg Duester; P Duc Si Dong; Tariq M Rana
Journal:  Mol Cell       Date:  2014-02-13       Impact factor: 17.970

8.  A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs.

Authors:  Alex Charles Tuck; David Tollervey
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

9.  glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data.

Authors:  Andrew Paul Hutchins; Ralf Jauch; Mateusz Dyla; Diego Miranda-Saavedra
Journal:  Cell Regen (Lond)       Date:  2014-01-24

10.  DNMT1-interacting RNAs block gene-specific DNA methylation.

Authors:  Annalisa Di Ruscio; Alexander K Ebralidze; Touati Benoukraf; Giovanni Amabile; Loyal A Goff; Jolyon Terragni; Maria Eugenia Figueroa; Lorena Lobo De Figueiredo Pontes; Meritxell Alberich-Jorda; Pu Zhang; Mengchu Wu; Francesco D'Alò; Ari Melnick; Giuseppe Leone; Konstantin K Ebralidze; Sriharsa Pradhan; John L Rinn; Daniel G Tenen
Journal:  Nature       Date:  2013-10-09       Impact factor: 49.962

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  81 in total

1.  Lipopolysaccharide promotes pulmonary fibrosis in acute respiratory distress syndrome (ARDS) via lincRNA-p21 induced inhibition of Thy-1 expression.

Authors:  Wen-Qin Zhou; Peng Wang; Qiu-Ping Shao; Jian Wang
Journal:  Mol Cell Biochem       Date:  2016-07-08       Impact factor: 3.396

Review 2.  The Role of the p53 Protein in Stem-Cell Biology and Epigenetic Regulation.

Authors:  Arnold J Levine; Anna M Puzio-Kuter; Chang S Chan; Pierre Hainaut
Journal:  Cold Spring Harb Perspect Med       Date:  2016-09-01       Impact factor: 6.915

Review 3.  Trans-spliced long non-coding RNA: an emerging regulator of pluripotency.

Authors:  Chun-Ying Yu; Ching-Yu Chuang; Hung-Chih Kuo
Journal:  Cell Mol Life Sci       Date:  2018-06-30       Impact factor: 9.261

4.  Homeostatic balance of histone acetylation and deconstruction of repressive chromatin marker H3K9me3 during adipocyte differentiation of 3T3-L1 cells.

Authors:  Han-Heom Na; Keun-Cheol Kim
Journal:  Genes Genomics       Date:  2018-08-09       Impact factor: 1.839

Review 5.  LincRNa-p21: function and mechanism in cancer.

Authors:  Shaoyun Chen; Hairong Liang; Hui Yang; Kairu Zhou; Longmei Xu; Jiaxian Liu; Bei Lai; Li Song; Hao Luo; Jianming Peng; Zhidong Liu; Yongmei Xiao; Wen Chen; Huanwen Tang
Journal:  Med Oncol       Date:  2017-04-19       Impact factor: 3.064

6.  Capturing the interactome of newly transcribed RNA.

Authors:  Xichen Bao; Xiangpeng Guo; Menghui Yin; Muqddas Tariq; Yiwei Lai; Shahzina Kanwal; Jiajian Zhou; Na Li; Yuan Lv; Carlos Pulido-Quetglas; Xiwei Wang; Lu Ji; Muhammad J Khan; Xihua Zhu; Zhiwei Luo; Changwei Shao; Do-Hwan Lim; Xiao Liu; Nan Li; Wei Wang; Minghui He; Yu-Lin Liu; Carl Ward; Tong Wang; Gong Zhang; Dongye Wang; Jianhua Yang; Yiwen Chen; Chaolin Zhang; Ralf Jauch; Yun-Gui Yang; Yangming Wang; Baoming Qin; Minna-Liisa Anko; Andrew P Hutchins; Hao Sun; Huating Wang; Xiang-Dong Fu; Biliang Zhang; Miguel A Esteban
Journal:  Nat Methods       Date:  2018-02-12       Impact factor: 28.547

7.  Long intragenic non-coding RNA lincRNA-p21 suppresses development of human prostate cancer.

Authors:  Xiaohai Wang; Yuan Ruan; Xingjie Wang; Wei Zhao; Qi Jiang; Chenyi Jiang; Yuyang Zhao; Yongzhi Xu; Feng Sun; Yiping Zhu; Shujie Xia; Dongliang Xu
Journal:  Cell Prolif       Date:  2016-12-14       Impact factor: 6.831

8.  In Vivo Characterization of Linc-p21 Reveals Functional cis-Regulatory DNA Elements.

Authors:  Abigail F Groff; Diana B Sanchez-Gomez; Marcela M L Soruco; Chiara Gerhardinger; A Rasim Barutcu; Eric Li; Lara Elcavage; Olivia Plana; Lluvia V Sanchez; James C Lee; Martin Sauvageau; John L Rinn
Journal:  Cell Rep       Date:  2016-08-11       Impact factor: 9.423

9.  Mechanism of chromatin segregation to the nuclear periphery in C. elegans embryos.

Authors:  Adriana Gonzalez-Sandoval; Susan M Gasser
Journal:  Worm       Date:  2016-05-31

Review 10.  Long non-coding RNAs in rheumatoid arthritis.

Authors:  Zheng Li; Xingye Li; Chao Jiang; Wenwei Qian; Gary Tse; Matthew T V Chan; William K K Wu
Journal:  Cell Prolif       Date:  2017-11-07       Impact factor: 6.831

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