Literature DB >> 29961157

Trans-spliced long non-coding RNA: an emerging regulator of pluripotency.

Chun-Ying Yu1, Ching-Yu Chuang2, Hung-Chih Kuo3,4,5.   

Abstract

With dual capacities for unlimited self-renewal and pluripotent differentiation, pluripotent stem cells (PSCs) give rise to many cell types in our body and PSC culture systems provide an unparalleled opportunity to study early human development and disease. Accumulating evidence indicates that the molecular mechanisms underlying pluripotency maintenance in PSCs involve many factors. Among these regulators, recent studies have shown that long non-coding RNAs (lncRNAs) can affect the pluripotency circuitry by cooperating with master pluripotency-associated factors. Additionally, trans-spliced RNAs, which are generated by combining two or more pre-mRNA transcripts to produce a chimeric RNA, have been identified as regulators of various biological processes, including human pluripotency. In this review, we summarize and discuss current knowledge about the roles of lncRNAs, including trans-spliced lncRNAs, in controlling pluripotency.

Entities:  

Keywords:  Human embryonic stem cells; Induced pluripotent stem cells; Long non-coding RNAs; Pluripotency; Trans-spliced RNA

Mesh:

Substances:

Year:  2018        PMID: 29961157     DOI: 10.1007/s00018-018-2862-4

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  134 in total

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Journal:  FEBS Lett       Date:  1997-06-16       Impact factor: 4.124

2.  Core transcriptional regulatory circuitry in human embryonic stem cells.

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Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

3.  Novel noncoding RNA from human Y distal heterochromatic block (Yq12) generates testis-specific chimeric CDC2L2.

Authors:  Zeenath Jehan; Sambandam Vallinayagam; Shrish Tiwari; Suman Pradhan; Lalji Singh; Amritha Suresh; Hemakumar M Reddy; Y R Ahuja; Rachel A Jesudasan
Journal:  Genome Res       Date:  2006-11-09       Impact factor: 9.043

4.  Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal.

Authors:  Yue Wang; Zhenyu Xu; Junfeng Jiang; Chen Xu; Jiuhong Kang; Lei Xiao; Minjuan Wu; Jun Xiong; Xiaocan Guo; Houqi Liu
Journal:  Dev Cell       Date:  2013-03-28       Impact factor: 12.270

5.  Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing.

Authors:  Kalpana Kannan; Liguo Wang; Jianghua Wang; Michael M Ittmann; Wei Li; Laising Yen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-12       Impact factor: 11.205

6.  Octamer and Sox elements are required for transcriptional cis regulation of Nanog gene expression.

Authors:  Takao Kuroda; Masako Tada; Hiroshi Kubota; Hironobu Kimura; Shin-ya Hatano; Hirofumi Suemori; Norio Nakatsuji; Takashi Tada
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

Review 7.  The modifier of mdg4 locus in Drosophila: functional complexity is resolved by trans splicing.

Authors:  Rainer Dorn; Veiko Krauss
Journal:  Genetica       Date:  2003-03       Impact factor: 1.082

8.  Generation of human-induced pluripotent stem cells.

Authors:  In-Hyun Park; Paul H Lerou; Rui Zhao; Hongguang Huo; George Q Daley
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

9.  Comparison of the genes coding for the common 5' terminal sequence of messenger RNAs in three trypanosome species.

Authors:  T De Lange; T M Berkvens; H J Veerman; A C Frasch; J D Barry; P Borst
Journal:  Nucleic Acids Res       Date:  1984-06-11       Impact factor: 16.971

10.  Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.

Authors:  Masato Nakagawa; Michiyo Koyanagi; Koji Tanabe; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Keisuke Okita; Yuji Mochiduki; Nanako Takizawa; Shinya Yamanaka
Journal:  Nat Biotechnol       Date:  2007-11-30       Impact factor: 54.908

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  5 in total

1.  Downregulation of the Long Noncoding RNA IALNCR Targeting MAPK8/JNK1 Promotes Apoptosis and Antagonizes Bovine Viral Diarrhea Virus Replication in Host Cells.

Authors:  Xuwen Gao; Xiaobo Sun; Xin Yao; Yixin Wang; Yuan Li; Xiaoxia Jiang; Yanyan Han; Linhan Zhong; Li Wang; Houhui Song; Yigang Xu
Journal:  J Virol       Date:  2022-08-22       Impact factor: 6.549

2.  The fusion landscape of hepatocellular carcinoma.

Authors:  Chengpei Zhu; Liangcai Wu; Yanling Lv; Jinxia Guan; Xue Bai; Jianzhen Lin; Tingting Liu; Xiaobo Yang; Simon C Robson; Xinting Sang; Chenghai Xue; Haitao Zhao
Journal:  Mol Oncol       Date:  2019-04-11       Impact factor: 6.603

3.  Long noncoding RNA NEAT1 regulates the development of osteosarcoma through sponging miR-34a-5p to mediate HOXA13 expression as a competitive endogenous RNA.

Authors:  Shaolin Ji; Shunsheng Wang; Xiaodan Zhao; Li Lv
Journal:  Mol Genet Genomic Med       Date:  2019-05-01       Impact factor: 2.183

4.  LINC01128 expedites cervical cancer progression by regulating miR-383-5p/SFN axis.

Authors:  Yi Hu; Yan Ma; Jie Liu; Yanlin Cai; Mengmeng Zhang; Xiaoling Fang
Journal:  BMC Cancer       Date:  2019-11-28       Impact factor: 4.430

5.  LincRNA Cox-2 Regulates Lipopolysaccharide-Induced Inflammatory Response of Human Peritoneal Mesothelial Cells via Modulating miR-21/NF-κB Axis.

Authors:  Yaoyao Bian; Lili Yang; Bin Zhang; Wen Li; Sen Wang; Shuling Jiang; Xi Chen; Wenlin Li; Li Zeng
Journal:  Mediators Inflamm       Date:  2019-12-03       Impact factor: 4.711

  5 in total

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