Literature DB >> 25494804

Pf1 bacteriophage hydration by magic angle spinning solid-state NMR.

Ivan V Sergeyev1, Salima Bahri1, Loren A Day2, Ann E McDermott1.   

Abstract

High resolution two- and three-dimensional heteronuclear correlation spectroscopy ((1)H-(13)C, (1)H-(15)N, and (1)H-(13)C-(13)C HETCOR) has provided a detailed characterization of the internal and external hydration water of the Pf1 virion. This long and slender virion (2000 nm × 7 nm) contains highly stretched DNA within a capsid of small protein subunits, each only 46 amino acid residues. HETCOR cross-peaks have been unambiguously assigned to 25 amino acids, including most external residues 1-21 as well as residues 39-40 and 43-46 deep inside the virion. In addition, the deoxyribose rings of the DNA near the virion axis are in contact with water. The sets of cross-peaks to the DNA and to all 25 amino acid residues were from the same hydration water (1)H resonance; some of the assigned residues do not have exchangeable side-chain protons. A mapping of the contacts onto structural models indicates the presence of water "tunnels" through a highly hydrophobic region of the capsid. The present results significantly extend and modify results from a lower resolution study, and yield a comprehensive hydration surface map of Pf1. In addition, the internal water could be distinguished from external hydration water by means of paramagnetic relaxation enhancement. The internal water population may serve as a conveniently localized magnetization reservoir for structural studies.

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Year:  2014        PMID: 25494804     DOI: 10.1063/1.4903230

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Water Distribution, Dynamics, and Interactions with Alzheimer's β-Amyloid Fibrils Investigated by Solid-State NMR.

Authors:  Tuo Wang; Hyunil Jo; William F DeGrado; Mei Hong
Journal:  J Am Chem Soc       Date:  2017-04-21       Impact factor: 15.419

2.  Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.

Authors:  Ivan V Sergeyev; Boris Itin; Rivkah Rogawski; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

Review 3.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

4.  High-Resolution 17O NMR Spectroscopy of Structural Water.

Authors:  Eric G Keeler; Vladimir K Michaelis; Christopher B Wilson; Ivan Hung; Xiaoling Wang; Zhehong Gan; Robert G Griffin
Journal:  J Phys Chem B       Date:  2019-04-01       Impact factor: 2.991

5.  Mapping protein-protein interactions by double-REDOR-filtered magic angle spinning NMR spectroscopy.

Authors:  Changmiao Guo; Guangjin Hou; Xingyu Lu; Tatyana Polenova
Journal:  J Biomol NMR       Date:  2017-01-24       Impact factor: 2.835

Review 6.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

7.  TmDOTP: An NMR-based thermometer for magic angle spinning NMR experiments.

Authors:  Dongyu Zhang; Boris Itin; Ann E McDermott
Journal:  J Magn Reson       Date:  2019-08-16       Impact factor: 2.229

8.  Probing Hydronium Ion Histidine NH Exchange Rate Constants in the M2 Channel via Indirect Observation of Dipolar-Dephased 15N Signals in Magic-Angle-Spinning NMR.

Authors:  Riqiang Fu; Yimin Miao; Huajun Qin; Timothy A Cross
Journal:  J Am Chem Soc       Date:  2016-12-01       Impact factor: 15.419

9.  Aromatic spectral editing techniques for magic-angle-spinning solid-state NMR spectroscopy of uniformly (13)C-labeled proteins.

Authors:  Jonathan K Williams; Klaus Schmidt-Rohr; Mei Hong
Journal:  Solid State Nucl Magn Reson       Date:  2015-09-14       Impact factor: 2.293

Review 10.  Virus Structures and Dynamics by Magic-Angle Spinning NMR.

Authors:  Gal Porat-Dahlerbruch; Amir Goldbourt; Tatyana Polenova
Journal:  Annu Rev Virol       Date:  2021-09-29       Impact factor: 10.431

  10 in total

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