Literature DB >> 34586870

Virus Structures and Dynamics by Magic-Angle Spinning NMR.

Gal Porat-Dahlerbruch1, Amir Goldbourt2, Tatyana Polenova1,3.   

Abstract

Techniques for atomic-resolution structural biology have evolved during the past several decades. Breakthroughs in instrumentation, sample preparation, and data analysis that occurred in the past decade have enabled characterization of viruses with an unprecedented level of detail. Here we review the recent advances in magic-angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy for structural analysis of viruses and viral assemblies. MAS NMR is a powerful method that yields information on 3D structures and dynamics in a broad range of experimental conditions. After a brief introduction, we discuss recent structural and functional studies of several viruses investigated with atomic resolution at various levels of structural organization, from individual domains of a membrane protein reconstituted into lipid bilayers to virus-like particles and intact viruses. We present examples of the unique information revealed by MAS NMR about drug binding, conduction mechanisms, interactions with cellular host factors, and DNA packaging in biologically relevant environments that are inaccessible by other methods.

Entities:  

Keywords:  MAS NMR; capsids; dynamics; solid-state NMR; structure; virus assemblies

Mesh:

Substances:

Year:  2021        PMID: 34586870      PMCID: PMC8973440          DOI: 10.1146/annurev-virology-011921-064653

Source DB:  PubMed          Journal:  Annu Rev Virol        ISSN: 2327-056X            Impact factor:   10.431


  105 in total

1.  Cholesterol Interaction with the Trimeric HIV Fusion Protein gp41 in Lipid Bilayers Investigated by Solid-State NMR Spectroscopy and Molecular Dynamics Simulations.

Authors:  Byungsu Kwon; Taraknath Mandal; Matthew R Elkins; Younghoon Oh; Qiang Cui; Mei Hong
Journal:  J Mol Biol       Date:  2020-06-24       Impact factor: 5.469

2.  Oligomerization state and supramolecular structure of the HIV-1 Vpu protein transmembrane segment in phospholipid bilayers.

Authors:  Jun-Xia Lu; Simon Sharpe; Rodolfo Ghirlando; Wai-Ming Yau; Robert Tycko
Journal:  Protein Sci       Date:  2010-10       Impact factor: 6.725

3.  Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.

Authors:  Byungsu Kwon; Myungwoon Lee; Alan J Waring; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-06-22       Impact factor: 15.419

4.  Protein-RNA interfaces probed by 1H-detected MAS solid-state NMR spectroscopy.

Authors:  Sam Asami; Magdalena Rakwalska-Bange; Teresa Carlomagno; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2013-01-18       Impact factor: 15.336

5.  Complete chemical shift assignment of the ssDNA in the filamentous bacteriophage fd reports on its conformation and on its interface with the capsid shell.

Authors:  Omry Morag; Gili Abramov; Amir Goldbourt
Journal:  J Am Chem Soc       Date:  2014-01-30       Impact factor: 15.419

Review 6.  Structure and Dynamics of Membrane Proteins from Solid-State NMR.

Authors:  Venkata S Mandala; Jonathan K Williams; Mei Hong
Journal:  Annu Rev Biophys       Date:  2018-03-02       Impact factor: 12.981

7.  Effects of an HIV-1 maturation inhibitor on the structure and dynamics of CA-SP1 junction helices in virus-like particles.

Authors:  Sebanti Gupta; John M Louis; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-27       Impact factor: 11.205

8.  Mechanisms of proton conduction and gating in influenza M2 proton channels from solid-state NMR.

Authors:  Fanghao Hu; Wenbin Luo; Mei Hong
Journal:  Science       Date:  2010-10-22       Impact factor: 47.728

9.  Structure and mechanism of the M2 proton channel of influenza A virus.

Authors:  Jason R Schnell; James J Chou
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

10.  Atomic structures of closed and open influenza B M2 proton channel reveal the conduction mechanism.

Authors:  Venkata S Mandala; Alexander R Loftis; Alexander A Shcherbakov; Bradley L Pentelute; Mei Hong
Journal:  Nat Struct Mol Biol       Date:  2020-02-03       Impact factor: 15.369

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  2 in total

1.  Conformational Changes in Ff Phage Protein gVp upon Complexation with Its Viral Single-Stranded DNA Revealed Using Magic-Angle Spinning Solid-State NMR.

Authors:  Smadar Kedem; Roni Rene Hassid; Yoav Shamir; Amir Goldbourt
Journal:  Viruses       Date:  2022-06-10       Impact factor: 5.818

Review 2.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

  2 in total

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