Literature DB >> 25489112

Microbial biosynthesis of medium-chain 1-alkenes by a nonheme iron oxidase.

Zhe Rui1, Xin Li2, Xuejun Zhu1, Joyce Liu3, Bonnie Domigan1, Ian Barr4, Jamie H D Cate5, Wenjun Zhang6.   

Abstract

Aliphatic medium-chain 1-alkenes (MCAEs, ∼10 carbons) are "drop-in" compatible next-generation fuels and precursors to commodity chemicals. Mass production of MCAEs from renewable resources holds promise for mitigating dependence on fossil hydrocarbons. An MCAE, such as 1-undecene, is naturally produced by Pseudomonas as a semivolatile metabolite through an unknown biosynthetic pathway. We describe here the discovery of a single gene conserved in Pseudomonas responsible for 1-undecene biosynthesis. The encoded enzyme is able to convert medium-chain fatty acids (C10-C14) into their corresponding terminal olefins using an oxygen-activating, nonheme iron-dependent mechanism. Both biochemical and X-ray crystal structural analyses suggest an unusual mechanism of β-hydrogen abstraction during fatty acid substrate activation. Our discovery unveils previously unidentified chemistry in the nonheme Fe(II) enzyme family, provides an opportunity to explore the biology of 1-undecene in Pseudomonas, and paves the way for tailored bioconversion of renewable raw materials to MCAE-based biofuels and chemical commodities.

Entities:  

Keywords:  biofuel; biosynthesis; hydrocarbon; iron-dependent desaturase/decarboxylase; terminal olefin

Mesh:

Substances:

Year:  2014        PMID: 25489112      PMCID: PMC4280606          DOI: 10.1073/pnas.1419701112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions.

Authors:  D Blom; C Fabbri; E C Connor; F P Schiestl; D R Klauser; T Boller; L Eberl; L Weisskopf
Journal:  Environ Microbiol       Date:  2011-09-20       Impact factor: 5.491

2.  O(2)-evolving chlorite dismutase as a tool for studying O(2)-utilizing enzymes.

Authors:  Laura M K Dassama; Timothy H Yosca; Denise A Conner; Michael H Lee; Béatrice Blanc; Bennett R Streit; Michael T Green; Jennifer L DuBois; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2012-02-13       Impact factor: 3.162

3.  Mutagenesis studies on TenA: a thiamin salvage enzyme from Bacillus subtilis.

Authors:  Amy L Jenkins; Yang Zhang; Steven E Ealick; Tadhg P Begley
Journal:  Bioorg Chem       Date:  2007-12-03       Impact factor: 5.275

4.  Microbial engineering for the production of advanced biofuels.

Authors:  Pamela P Peralta-Yahya; Fuzhong Zhang; Stephen B del Cardayre; Jay D Keasling
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

5.  Systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1.

Authors:  Peter D Newell; Shiro Yoshioka; Kelli L Hvorecny; Russell D Monds; George A O'Toole
Journal:  J Bacteriol       Date:  2011-07-15       Impact factor: 3.490

Review 6.  Bacterial volatiles and diagnosis of respiratory infections.

Authors:  James E Graham
Journal:  Adv Appl Microbiol       Date:  2013       Impact factor: 5.086

7.  Modular synthase-encoding gene involved in α-olefin biosynthesis in Synechococcus sp. strain PCC 7002.

Authors:  Daniel Mendez-Perez; Matthew B Begemann; Brian F Pfleger
Journal:  Appl Environ Microbiol       Date:  2011-04-29       Impact factor: 4.792

8.  Terminal olefin (1-alkene) biosynthesis by a novel p450 fatty acid decarboxylase from Jeotgalicoccus species.

Authors:  Mathew A Rude; Tarah S Baron; Shane Brubaker; Murtaza Alibhai; Stephen B Del Cardayre; Andreas Schirmer
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

Review 9.  Substrate activation by iron superoxo intermediates.

Authors:  Wilfred A van der Donk; Carsten Krebs; J Martin Bollinger
Journal:  Curr Opin Struct Biol       Date:  2010-10-14       Impact factor: 6.809

10.  Mechanistic studies of an unprecedented enzyme-catalysed 1,2-phosphono-migration reaction.

Authors:  Wei-chen Chang; Mishtu Dey; Pinghua Liu; Steven O Mansoorabadi; Sung-Ju Moon; Zongbao K Zhao; Catherine L Drennan; Hung-wen Liu
Journal:  Nature       Date:  2013-04-04       Impact factor: 49.962

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  48 in total

1.  A chemocentric view of the natural product inventory.

Authors:  Christopher T Walsh
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

2.  Substrate-Triggered Formation of a Peroxo-Fe2(III/III) Intermediate during Fatty Acid Decarboxylation by UndA.

Authors:  Bo Zhang; Lauren J Rajakovich; Devon Van Cura; Elizabeth J Blaesi; Andrew J Mitchell; Christina R Tysoe; Xuejun Zhu; Bennett R Streit; Zhe Rui; Wenjun Zhang; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-09-10       Impact factor: 15.419

Review 3.  Divergent mechanisms of iron-containing enzymes for hydrocarbon biosynthesis.

Authors:  Courtney E Wise; Job L Grant; Jose A Amaya; Steven C Ratigan; Chun H Hsieh; Olivia M Manley; Thomas M Makris
Journal:  J Biol Inorg Chem       Date:  2016-12-21       Impact factor: 3.358

Review 4.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

5.  Catalytic strategy for carbon-carbon bond scission by the cytochrome P450 OleT.

Authors:  Job L Grant; Megan E Mitchell; Thomas Michael Makris
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-23       Impact factor: 11.205

6.  The Enigmatic P450 Decarboxylase OleT Is Capable of, but Evolved To Frustrate, Oxygen Rebound Chemistry.

Authors:  Chun H Hsieh; Xiongyi Huang; José A Amaya; Cooper D Rutland; Carson L Keys; John T Groves; Rachel N Austin; Thomas M Makris
Journal:  Biochemistry       Date:  2017-06-26       Impact factor: 3.162

7.  Chemistry at the protein-mineral interface in L-ferritin assists the assembly of a functional (μ3-oxo)Tris[(μ2-peroxo)] triiron(III) cluster.

Authors:  Cecilia Pozzi; Silvia Ciambellotti; Caterina Bernacchioni; Flavio Di Pisa; Stefano Mangani; Paola Turano
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-15       Impact factor: 11.205

8.  Biosynthesis of fosfomycin in pseudomonads reveals an unexpected enzymatic activity in the metallohydrolase superfamily.

Authors:  Max A Simon; Chayanid Ongpipattanakul; Satish K Nair; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

9.  A Peroxodiiron(III/III) Intermediate Mediating Both N-Hydroxylation Steps in Biosynthesis of the N-Nitrosourea Pharmacophore of Streptozotocin by the Multi-domain Metalloenzyme SznF.

Authors:  Molly J McBride; Debangsu Sil; Tai L Ng; Anne Marie Crooke; Grace E Kenney; Christina R Tysoe; Bo Zhang; Emily P Balskus; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2020-06-24       Impact factor: 15.419

10.  Microalgae Synthesize Hydrocarbons from Long-Chain Fatty Acids via a Light-Dependent Pathway.

Authors:  Damien Sorigué; Bertrand Légeret; Stéphan Cuiné; Pablo Morales; Boris Mirabella; Geneviève Guédeney; Yonghua Li-Beisson; Reinhard Jetter; Gilles Peltier; Fred Beisson
Journal:  Plant Physiol       Date:  2016-06-10       Impact factor: 8.340

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