Literature DB >> 28202724

Chemistry at the protein-mineral interface in L-ferritin assists the assembly of a functional (μ3-oxo)Tris[(μ2-peroxo)] triiron(III) cluster.

Cecilia Pozzi1, Silvia Ciambellotti2,3, Caterina Bernacchioni2,3, Flavio Di Pisa1, Stefano Mangani4,2, Paola Turano5,3.   

Abstract

X-ray structures of homopolymeric L-ferritin obtained by freezing protein crystals at increasing exposure times to a ferrous solution showed the progressive formation of a triiron cluster on the inner cage surface of each subunit. After 60 min exposure, a fully assembled (μ3-oxo)Tris[(μ2-peroxo)(μ2-glutamato-κO:κO')](glutamato-κO)(diaquo)triiron(III) anionic cluster appears in human L-ferritin. Glu60, Glu61, and Glu64 provide the anchoring of the cluster to the protein cage. Glu57 shuttles incoming iron ions toward the cluster. We observed a similar metallocluster in horse spleen L-ferritin, indicating that it represents a common feature of mammalian L-ferritins. The structures suggest a mechanism for iron mineral formation at the protein interface. The functional significance of the observed patch of carboxylate side chains and resulting metallocluster for biomineralization emerges from the lower iron oxidation rate measured in the E60AE61AE64A variant of human L-ferritin, leading to the proposal that the observed metallocluster corresponds to the suggested, but yet unobserved, nucleation site of L-ferritin.

Entities:  

Keywords:  L-ferritin; X-ray; biomineralization; metallocluster; nucleation site

Mesh:

Substances:

Year:  2017        PMID: 28202724      PMCID: PMC5347543          DOI: 10.1073/pnas.1614302114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Solid-State NMR of PEGylated Proteins.

Authors:  Enrico Ravera; Silvia Ciambellotti; Linda Cerofolini; Tommaso Martelli; Tatiana Kozyreva; Caterina Bernacchioni; Stefano Giuntini; Marco Fragai; Paola Turano; Claudio Luchinat
Journal:  Angew Chem Int Ed Engl       Date:  2016-01-12       Impact factor: 15.336

2.  Evidence of new cadmium binding sites in recombinant horse L-chain ferritin by anomalous Fourier difference map calculation.

Authors:  T Granier; G Comberton; B Gallois; B L d'Estaintot; A Dautant; R R Crichton; G Précigoux
Journal:  Proteins       Date:  1998-06-01

3.  Multiple pathways for mineral core formation in mammalian apoferritin. The role of hydrogen peroxide.

Authors:  Guanghua Zhao; Fadi Bou-Abdallah; Paolo Arosio; Sonia Levi; Christine Janus-Chandler; N Dennis Chasteen
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

4.  mu-1,2-Peroxobridged di-iron(III) dimer formation in human H-chain ferritin.

Authors:  Fadi Bou-Abdallah; Georgia C Papaefthymiou; Danielle M Scheswohl; Sean D Stanga; Paolo Arosio; N Dennis Chasteen
Journal:  Biochem J       Date:  2002-05-15       Impact factor: 3.857

5.  Structural description of the active sites of mouse L-chain ferritin at 1.2 A resolution.

Authors:  Thierry Granier; Béatrice Langlois d'Estaintot; Bernard Gallois; Jean-Marc Chevalier; Gilles Précigoux; Paolo Santambrogio; Paolo Arosio
Journal:  J Biol Inorg Chem       Date:  2002-09-06       Impact factor: 3.358

6.  Mutant ferritin L-chains that cause neurodegeneration act in a dominant-negative manner to reduce ferritin iron incorporation.

Authors:  Sara Luscieti; Paolo Santambrogio; Béatrice Langlois d'Estaintot; Thierry Granier; Anna Cozzi; Maura Poli; Bernard Gallois; Dario Finazzi; Angela Cattaneo; Sonia Levi; Paolo Arosio
Journal:  J Biol Chem       Date:  2010-02-16       Impact factor: 5.157

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Ligand access to the active site in Thermus thermophilus ba(3) and bovine heart aa(3) cytochrome oxidases.

Authors:  William McDonald; Chie Funatogawa; Yang Li; Istvan Szundi; Ying Chen; James A Fee; C David Stout; Ólöf Einarsdóttir
Journal:  Biochemistry       Date:  2013-01-18       Impact factor: 3.162

9.  A protein carboxylate coordinated oxo-centered tri-nuclear iron complex with possible implications for ferritin mineralization.

Authors:  Martin Högbom; Pär Nordlund
Journal:  FEBS Lett       Date:  2004-06-04       Impact factor: 4.124

Review 10.  Ferritins: a family of molecules for iron storage, antioxidation and more.

Authors:  Paolo Arosio; Rosaria Ingrassia; Patrizia Cavadini
Journal:  Biochim Biophys Acta       Date:  2008-09-26
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  9 in total

Review 1.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

2.  The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin.

Authors:  Taro Masuda; Jiachen Zang; Guanghua Zhao; Bunzo Mikami
Journal:  Protein Sci       Date:  2018-11       Impact factor: 6.725

Review 3.  Diversity of structures and functions of oxo-bridged non-heme diiron proteins.

Authors:  Maria Luiza Caldas Nogueira; Anthony J Pastore; Victor L Davidson
Journal:  Arch Biochem Biophys       Date:  2021-05-12       Impact factor: 4.114

4.  Folding of an Intrinsically Disordered Iron-Binding Peptide in Response to Sedimentation Revealed by Cryo-EM.

Authors:  Geula Davidov; Gili Abelya; Ran Zalk; Benjamin Izbicki; Sharon Shaibi; Lior Spektor; Dayana Shagidov; Esther G Meyron-Holtz; Raz Zarivach; Gabriel A Frank
Journal:  J Am Chem Soc       Date:  2020-11-09       Impact factor: 15.419

5.  Structural comparison of two ferritins from the marine invertebrate Phascolosoma esculenta.

Authors:  Tinghong Ming; Hengshang Huan; Chang Su; Chunheng Huo; Yan Wu; Qinqin Jiang; Xiaoting Qiu; Chenyang Lu; Jun Zhou; Ye Li; Xiurong Su
Journal:  FEBS Open Bio       Date:  2021-02-28       Impact factor: 2.693

6.  Crystallographic characterization of a marine invertebrate ferritin from the sea cucumber Apostichopus japonicus.

Authors:  Yan Wu; Tinghong Ming; Chunheng Huo; Xiaoting Qiu; Chang Su; Chenyang Lu; Jun Zhou; Ye Li; Xiurong Su
Journal:  FEBS Open Bio       Date:  2022-02-07       Impact factor: 2.693

7.  The Change in the Structure and Functionality of Ferritin during the Production of Pea Seed Milk.

Authors:  Yilin Xing; Jiaqi Ma; Qimeng Yao; Xuemin Chen; Jiachen Zang; Guanghua Zhao
Journal:  Foods       Date:  2022-02-16

8.  Structural Insights Into the Effects of Interactions With Iron and Copper Ions on Ferritin From the Blood Clam Tegillarca granosa.

Authors:  Tinghong Ming; Qinqin Jiang; Chunheng Huo; Hengshang Huan; Yan Wu; Chang Su; Xiaoting Qiu; Chenyang Lu; Jun Zhou; Ye Li; Jiaojiao Han; Zhen Zhang; Xiurong Su
Journal:  Front Mol Biosci       Date:  2022-03-11

9.  Cancer cell death induced by ferritins and the peculiar role of their labile iron pool.

Authors:  Juan Carlos Cutrin; Diego Alberti; Caterina Bernacchioni; Silvia Ciambellotti; Paola Turano; Claudio Luchinat; Simonetta Geninatti Crich; Silvio Aime
Journal:  Oncotarget       Date:  2018-06-15
  9 in total

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