Literature DB >> 22304240

O(2)-evolving chlorite dismutase as a tool for studying O(2)-utilizing enzymes.

Laura M K Dassama1, Timothy H Yosca, Denise A Conner, Michael H Lee, Béatrice Blanc, Bennett R Streit, Michael T Green, Jennifer L DuBois, Carsten Krebs, J Martin Bollinger.   

Abstract

The direct interrogation of fleeting intermediates by rapid-mixing kinetic methods has significantly advanced our understanding of enzymes that utilize dioxygen. The gas's modest aqueous solubility (<2 mM at 1 atm) presents a technical challenge to this approach, because it limits the rate of formation and extent of accumulation of intermediates. This challenge can be overcome by use of the heme enzyme chlorite dismutase (Cld) for the rapid, in situ generation of O(2) at concentrations far exceeding 2 mM. This method was used to define the O(2) concentration dependence of the reaction of the class Ic ribonucleotide reductase (RNR) from Chlamydia trachomatis, in which the enzyme's Mn(IV)/Fe(III) cofactor forms from a Mn(II)/Fe(II) complex and O(2) via a Mn(IV)/Fe(IV) intermediate, at effective O(2) concentrations as high as ~10 mM. With a more soluble receptor, myoglobin, an O(2) adduct accumulated to a concentration of >6 mM in <15 ms. Finally, the C-H-bond-cleaving Fe(IV)-oxo complex, J, in taurine:α-ketoglutarate dioxygenase and superoxo-Fe(2)(III/III) complex, G, in myo-inositol oxygenase, and the tyrosyl-radical-generating Fe(2)(III/IV) intermediate, X, in Escherichia coli RNR, were all accumulated to yields more than twice those previously attained. This means of in situ O(2) evolution permits a >5 mM "pulse" of O(2) to be generated in <1 ms at the easily accessible Cld concentration of 50 μM. It should therefore significantly extend the range of kinetic and spectroscopic experiments that can routinely be undertaken in the study of these enzymes and could also facilitate resolution of mechanistic pathways in cases of either sluggish or thermodynamically unfavorable O(2) addition steps.

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Year:  2012        PMID: 22304240      PMCID: PMC3297476          DOI: 10.1021/bi201906x

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  69 in total

1.  Biochemical studies on inositol. IV. Conversion of inositol to glucuronic acid by rat kidney extracts.

Authors:  F C CHARALAMPOUS; C LYRAS
Journal:  J Biol Chem       Date:  1957-09       Impact factor: 5.157

2.  Histone demethylation by a family of JmjC domain-containing proteins.

Authors:  Yu-ichi Tsukada; Jia Fang; Hediye Erdjument-Bromage; Maria E Warren; Christoph H Borchers; Paul Tempst; Yi Zhang
Journal:  Nature       Date:  2005-12-18       Impact factor: 49.962

3.  Enzymatic C-H activation by metal-superoxo intermediates.

Authors:  J Martin Bollinger; Carsten Krebs
Journal:  Curr Opin Chem Biol       Date:  2007-03-19       Impact factor: 8.822

4.  Targeting of HIF-alpha to the von Hippel-Lindau ubiquitylation complex by O2-regulated prolyl hydroxylation.

Authors:  P Jaakkola; D R Mole; Y M Tian; M I Wilson; J Gielbert; S J Gaskell; A von Kriegsheim; H F Hebestreit; M Mukherji; C J Schofield; P H Maxwell; C W Pugh; P J Ratcliffe
Journal:  Science       Date:  2001-04-05       Impact factor: 47.728

5.  Evidence for C-H cleavage by an iron-superoxide complex in the glycol cleavage reaction catalyzed by myo-inositol oxygenase.

Authors:  Gang Xing; Yinghui Diao; Lee M Hoffart; Eric W Barr; K Sandeep Prabhu; Ryan J Arner; C Channa Reddy; Carsten Krebs; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

6.  Use of a chemical trigger for electron transfer to characterize a precursor to cluster X in assembly of the iron-radical cofactor of Escherichia coli ribonucleotide reductase.

Authors:  Lana Saleh; Carsten Krebs; Brenda A Ley; Sunail Naik; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

7.  Iron and free radical in ribonucleotide reductase. Exchange of iron and Mössbauer spectroscopy of the protein B2 subunit of the Escherichia coli enzyme.

Authors:  C L Atkin; L Thelander; P Reichard; G Lang
Journal:  J Biol Chem       Date:  1973-11-10       Impact factor: 5.157

8.  Branched activation- and catalysis-specific pathways for electron relay to the manganese/iron cofactor in ribonucleotide reductase from Chlamydia trachomatis.

Authors:  Wei Jiang; Lana Saleh; Eric W Barr; Jiajia Xie; Monique Maslak Gardner; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2008-07-26       Impact factor: 3.162

9.  Substrate-triggered formation and remarkable stability of the C-H bond-cleaving chloroferryl intermediate in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Courtney M Krest; Eric W Barr; Frédéric H Vaillancourt; Christopher T Walsh; Michael T Green; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2009-05-26       Impact factor: 3.162

10.  Spectroscopic and electronic structure studies of intermediate X in ribonucleotide reductase R2 and two variants: a description of the FeIV-oxo bond in the FeIII-O-FeIV dimer.

Authors:  Natasa Mitić; Michael D Clay; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-06-29       Impact factor: 15.419

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  20 in total

1.  π-Frontier molecular orbitals in S = 2 ferryl species and elucidation of their contributions to reactivity.

Authors:  Martin Srnec; Shaun D Wong; Jason England; Lawrence Que; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

2.  Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; Carsten Krebs; J Martin Bollinger; Alexey Silakov; Christopher J Pollock
Journal:  J Am Chem Soc       Date:  2017-01-27       Impact factor: 15.419

3.  Evidence that the fosfomycin-producing epoxidase, HppE, is a non-heme-iron peroxidase.

Authors:  Chen Wang; Wei-chen Chang; Yisong Guo; Hui Huang; Spencer C Peck; Maria E Pandelia; Geng-min Lin; Hung-wen Liu; Carsten Krebs; J Martin Bollinger
Journal:  Science       Date:  2013-10-10       Impact factor: 47.728

4.  Hydrogen Donation but not Abstraction by a Tyrosine (Y68) during Endoperoxide Installation by Verruculogen Synthase (FtmOx1).

Authors:  Noah P Dunham; José M Del Río Pantoja; Bo Zhang; Lauren J Rajakovich; Benjamin D Allen; Carsten Krebs; Amie K Boal; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-06-12       Impact factor: 15.419

5.  Peroxidase-type reactions suggest a heterolytic/nucleophilic O-O joining mechanism in the heme-dependent chlorite dismutase.

Authors:  Jeffrey A Mayfield; Béatrice Blanc; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2013-09-23       Impact factor: 3.162

6.  Observing 3-hydroxyanthranilate-3,4-dioxygenase in action through a crystalline lens.

Authors:  Yifan Wang; Kathy Fange Liu; Yu Yang; Ian Davis; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-30       Impact factor: 11.205

7.  A 2.8 Å Fe-Fe separation in the Fe2(III/IV) intermediate, X, from Escherichia coli ribonucleotide reductase.

Authors:  Laura M K Dassama; Alexey Silakov; Courtney M Krest; Julio C Calixto; Carsten Krebs; J Martin Bollinger; Michael T Green
Journal:  J Am Chem Soc       Date:  2013-10-31       Impact factor: 15.419

8.  Microbial biosynthesis of medium-chain 1-alkenes by a nonheme iron oxidase.

Authors:  Zhe Rui; Xin Li; Xuejun Zhu; Joyce Liu; Bonnie Domigan; Ian Barr; Jamie H D Cate; Wenjun Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

9.  Radical-translocation intermediates and hurdling of pathway defects in "super-oxidized" (Mn(IV)/Fe(IV)) Chlamydia trachomatis ribonucleotide reductase.

Authors:  Laura M K Dassama; Wei Jiang; Paul T Varano; Maria-Eirini Pandelia; Denise A Conner; Jiajia Xie; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2012-12-04       Impact factor: 15.419

10.  Novel Approaches for the Accumulation of Oxygenated Intermediates to Multi-Millimolar Concentrations.

Authors:  Carsten Krebs; Laura M K Dassama; Megan L Matthews; Wei Jiang; John C Price; Victoria Korboukh; Ning Li; J Martin Bollinger
Journal:  Coord Chem Rev       Date:  2013-01-01       Impact factor: 22.315

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