Literature DB >> 25461777

Membrane association of the PTEN tumor suppressor: neutron scattering and MD simulations reveal the structure of protein-membrane complexes.

Hirsh Nanda1, Frank Heinrich1, Mathias Lösche2.   

Abstract

Neutron reflection (NR) from planar interfaces is an emerging technology that provides unique and otherwise inaccessible structural information on disordered molecular systems such as membrane proteins associated with fluid bilayers, thus addressing one of the remaining challenges of structural biology. Although intrinsically a low-resolution technique, using structural information from crystallography or NMR allows the construction of NR models that describe the architecture of protein-membrane complexes at high resolution. In addition, a combination of these methods with molecular dynamics (MD) simulations has the potential to reveal the dynamics of protein interactions with the bilayer in atomistic detail. We review recent advances in this area by discussing the application of these techniques to the complex formed by the PTEN phosphatase with the plasma membrane. These studies provide insights in the cellular regulation of PTEN, its interaction with PI(4,5)P2 in the inner plasma membrane and the pathway by which its substrate, PI(3,4,5)P3, accesses the PTEN catalytic site.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Molecular dynamics simulations; Neutron reflection; PTEN; Phosphatidylinositolphosphate; Phosphatidylserine; Protein–membrane complex; Tethered bilayer lipid membranes

Mesh:

Substances:

Year:  2014        PMID: 25461777      PMCID: PMC4388770          DOI: 10.1016/j.ymeth.2014.10.014

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  83 in total

1.  Electrostatic interactions and binding orientation of HIV-1 matrix studied by neutron reflectivity.

Authors:  Hirsh Nanda; Siddhartha A K Datta; Frank Heinrich; Mathias Lösche; Alan Rein; Susan Krueger; Joseph E Curtis
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

2.  Progress in the development of phase-sensitive neutron reflectometry methods.

Authors:  C F Majkrzak; N F Berk; P Kienzle; U Perez-Salas
Journal:  Langmuir       Date:  2009-04-07       Impact factor: 3.882

Review 3.  Zooming in on disordered systems: neutron reflection studies of proteins associated with fluid membranes.

Authors:  Frank Heinrich; Mathias Lösche
Journal:  Biochim Biophys Acta       Date:  2014-03-25

4.  The polymer-supported phospholipid bilayer: tethering as a new approach to substrate-membrane stabilization.

Authors:  Christoph A Naumann; O Prucker; T Lehmann; J Rühe; W Knoll; C W Frank
Journal:  Biomacromolecules       Date:  2002 Jan-Feb       Impact factor: 6.988

5.  S-layer stabilized solid support lipid bilayers.

Authors:  B Wetzer; D Pum; U B Sleytr
Journal:  J Struct Biol       Date:  1997-07       Impact factor: 2.867

6.  Membrane association of the PTEN tumor suppressor: electrostatic interaction with phosphatidylserine-containing bilayers and regulatory role of the C-terminal tail.

Authors:  Siddharth S Shenoy; Hirsh Nanda; Mathias Lösche
Journal:  J Struct Biol       Date:  2012-10-13       Impact factor: 2.867

7.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

8.  Regulation of PTEN activity by its carboxyl-terminal autoinhibitory domain.

Authors:  Leticia Odriozola; Gobind Singh; Thuong Hoang; Andrew M Chan
Journal:  J Biol Chem       Date:  2007-06-12       Impact factor: 5.157

Review 9.  Parameters modulating the maximum insertion pressure of proteins and peptides in lipid monolayers.

Authors:  Philippe Calvez; Sylvain Bussières; Christian Salesse
Journal:  Biochimie       Date:  2009-04-05       Impact factor: 4.079

10.  Conformational transition of membrane-associated terminally acylated HIV-1 Nef.

Authors:  Bulent Akgun; Sushil Satija; Hirsh Nanda; Gregory F Pirrone; Xiaomeng Shi; John R Engen; Michael S Kent
Journal:  Structure       Date:  2013-09-12       Impact factor: 5.006

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  13 in total

1.  Membrane Anchoring of Hck Kinase via the Intrinsically Disordered SH4-U and Length Scale Associated with Subcellular Localization.

Authors:  Matthew P Pond; Rebecca Eells; Bradley W Treece; Frank Heinrich; Mathias Lösche; Benoît Roux
Journal:  J Mol Biol       Date:  2019-12-23       Impact factor: 5.469

2.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

Review 3.  Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins.

Authors:  Daniel Kerr; Gregory T Tietjen; Zhiliang Gong; Emad Tajkhorshid; Erin J Adams; Ka Yee C Lee
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-06-18       Impact factor: 3.747

4.  Conformational Dynamics and Allosteric Regulation Landscapes of Germline PTEN Mutations Associated with Autism Compared to Those Associated with Cancer.

Authors:  Iris Nira Smith; Stetson Thacker; Marilyn Seyfi; Feixiong Cheng; Charis Eng
Journal:  Am J Hum Genet       Date:  2019-04-18       Impact factor: 11.025

5.  Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation.

Authors:  Iris N Smith; Jennifer E Dawson; James Krieger; Stetson Thacker; Ivet Bahar; Charis Eng
Journal:  J Chem Inf Model       Date:  2022-08-24       Impact factor: 6.162

6.  Voltage-sensing phosphatase modulation by a C2 domain.

Authors:  Paul M Castle; Kevin D Zolman; Susy C Kohout
Journal:  Front Pharmacol       Date:  2015-04-08       Impact factor: 5.810

Review 7.  Complex biomembrane mimetics on the sub-nanometer scale.

Authors:  Frederick A Heberle; Georg Pabst
Journal:  Biophys Rev       Date:  2017-07-17

Review 8.  Structural Mechanisms of PTEN Regulation.

Authors:  Glenn R Masson; Roger L Williams
Journal:  Cold Spring Harb Perspect Med       Date:  2020-03-02       Impact factor: 6.915

9.  The mechanism of full activation of tumor suppressor PTEN at the phosphoinositide-enriched membrane.

Authors:  Hyunbum Jang; Iris Nira Smith; Charis Eng; Ruth Nussinov
Journal:  iScience       Date:  2021-04-17

10.  Structural characterization of membrane-bound human immunodeficiency virus-1 Gag matrix with neutron reflectometry.

Authors:  Rebecca Eells; Marilia Barros; Kerry M Scott; Ioannis Karageorgos; Frank Heinrich; Mathias Lösche
Journal:  Biointerphases       Date:  2017-05-16       Impact factor: 2.456

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