Literature DB >> 36001481

Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation.

Iris N Smith1, Jennifer E Dawson1, James Krieger2, Stetson Thacker1,3, Ivet Bahar2, Charis Eng1,3,4,5,6.   

Abstract

The phosphatase and tensin homologue deleted on chromosome 10 (PTEN) tumor suppressor gene encodes a tightly regulated dual-specificity phosphatase that serves as the master regulator of PI3K/AKT/mTOR signaling. The carboxy-terminal tail (CTT) is key to regulation and harbors multiple phosphorylation sites (Ser/Thr residues 380-385). CTT phosphorylation suppresses the phosphatase activity by inducing a stable, closed conformation. However, little is known about the mechanisms of phosphorylation-induced CTT-deactivation dynamics. Using explicit solvent microsecond molecular dynamics simulations, we show that CTT phosphorylation leads to a partially collapsed conformation, which alters the secondary structure of PTEN and induces long-range conformational rearrangements that encompass the active site. The active site rearrangements prevent localization of PTEN to the membrane, precluding lipid phosphatase activity. Notably, we have identified phosphorylation-induced allosteric coupling between the interdomain region and a hydrophobic site neighboring the active site in the phosphatase domain. Collectively, the results provide a mechanistic understanding of CTT phosphorylation dynamics and reveal potential druggable allosteric sites in a previously believed clinically undruggable protein.

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Year:  2022        PMID: 36001481      PMCID: PMC9472802          DOI: 10.1021/acs.jcim.2c00441

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   6.162


  80 in total

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Authors:  Qin Wang; Yang Wei; Madhusoodanan Mottamal; Mary F Roberts; Goran Krilov
Journal:  J Mol Graph Model       Date:  2010-05-20       Impact factor: 2.518

3.  Conformational Preferences of an Intrinsically Disordered Protein Domain: A Case Study for Modern Force Fields.

Authors:  Srinivasa M Gopal; Sebastian Wingbermühle; Jan Schnatwinkel; Selina Juber; Christian Herrmann; Lars V Schäfer
Journal:  J Phys Chem B       Date:  2020-12-31       Impact factor: 2.991

Review 4.  Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology.

Authors:  Francis J O'Reilly; Juri Rappsilber
Journal:  Nat Struct Mol Biol       Date:  2018-10-29       Impact factor: 15.369

5.  Improved Method for the Identification and Validation of Allosteric Sites.

Authors:  Kun Song; Xinyi Liu; Wenkang Huang; Shaoyong Lu; Qiancheng Shen; Lu Zhang; Jian Zhang
Journal:  J Chem Inf Model       Date:  2017-08-31       Impact factor: 4.956

6.  Ancient thioredoxins evolved to modern-day stability-function requirement by altering native state ensemble.

Authors:  Tushar Modi; Jonathan Huihui; Kingshuk Ghosh; S Banu Ozkan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

7.  PTEN mutation spectrum and genotype-phenotype correlations in Bannayan-Riley-Ruvalcaba syndrome suggest a single entity with Cowden syndrome.

Authors:  D J Marsh; J B Kum; K L Lunetta; M J Bennett; R J Gorlin; S F Ahmed; J Bodurtha; C Crowe; M A Curtis; M Dasouki; T Dunn; H Feit; M T Geraghty; J M Graham; S V Hodgson; A Hunter; B R Korf; D Manchester; S Miesfeldt; V A Murday; K L Nathanson; M Parisi; B Pober; C Romano; C Eng
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8.  ProDy: protein dynamics inferred from theory and experiments.

Authors:  Ahmet Bakan; Lidio M Meireles; Ivet Bahar
Journal:  Bioinformatics       Date:  2011-04-05       Impact factor: 6.937

9.  Review of the fundamental theories behind small angle X-ray scattering, molecular dynamics simulations, and relevant integrated application.

Authors:  Lauren Boldon; Fallon Laliberte; Li Liu
Journal:  Nano Rev       Date:  2015-02-25

10.  Hinge-shift mechanism as a protein design principle for the evolution of β-lactamases from substrate promiscuity to specificity.

Authors:  Tushar Modi; Valeria A Risso; Sergio Martinez-Rodriguez; Jose A Gavira; Mubark D Mebrat; Wade D Van Horn; Jose M Sanchez-Ruiz; S Banu Ozkan
Journal:  Nat Commun       Date:  2021-03-25       Impact factor: 14.919

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