Literature DB >> 31877324

Membrane Anchoring of Hck Kinase via the Intrinsically Disordered SH4-U and Length Scale Associated with Subcellular Localization.

Matthew P Pond1, Rebecca Eells2, Bradley W Treece2, Frank Heinrich3, Mathias Lösche4, Benoît Roux5.   

Abstract

Src family kinases (SFKs) are a group of nonreceptor tyrosine kinases that are characterized by their involvement in critical signal transduction pathways. SFKs are often found attached to membranes, but little is known about the conformation of the protein in this environment. Here, solution nuclear magnetic resonance (NMR), neutron reflectometry (NR), and molecular dynamics (MD) simulations were employed to study the membrane interactions of the intrinsically disordered SH4 and Unique domains of the Src family kinase Hck. Through development of a procedure to combine the information from the different techniques, we were able produce a first-of-its-kind atomically detailed structural ensemble of a membrane-bound intrinsically disordered protein. Evaluation of the model demonstrated its consistency with previous work and provided insight into how SFK Unique domains act to differentiate the family members from one another. Fortuitously, the position of the ensemble on the membrane allowed the model to be combined with configurations of the multidomain Hck kinase previously determined from small-angle solution X-ray scattering to produce full-length models of membrane-anchored Hck. The resulting models allowed us to estimate that the kinase active site is positioned about 65 ± 35 Å away from the membrane surface, offering the first estimations of the length scale associated with the concept of SFK subcellular localization.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Hck; Src family kinase; intrinsically disordered protein; membrane

Mesh:

Substances:

Year:  2019        PMID: 31877324      PMCID: PMC7301414          DOI: 10.1016/j.jmb.2019.11.024

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  63 in total

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Journal:  J Magn Reson       Date:  2011-10-25       Impact factor: 2.229

Review 2.  Structure and regulation of Src family kinases.

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Journal:  Oncogene       Date:  2004-10-18       Impact factor: 9.867

Review 3.  Choosing membrane mimetics for NMR structural studies of transmembrane proteins.

Authors:  Dror E Warschawski; Alexandre A Arnold; Maïwenn Beaugrand; Andrée Gravel; Étienne Chartrand; Isabelle Marcotte
Journal:  Biochim Biophys Acta       Date:  2011-04-06

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Authors:  F Sicheri; I Moarefi; J Kuriyan
Journal:  Nature       Date:  1997-02-13       Impact factor: 49.962

5.  Optimal Bicelle Size q for Solution NMR Studies of the Protein Transmembrane Partition.

Authors:  Alessandro Piai; Qingshan Fu; Jyoti Dev; James J Chou
Journal:  Chemistry       Date:  2016-12-22       Impact factor: 5.236

Review 6.  Zooming in on disordered systems: neutron reflection studies of proteins associated with fluid membranes.

Authors:  Frank Heinrich; Mathias Lösche
Journal:  Biochim Biophys Acta       Date:  2014-03-25

7.  2-aminothiazole as a novel kinase inhibitor template. Structure-activity relationship studies toward the discovery of N-(2-chloro-6-methylphenyl)-2-[[6-[4-(2-hydroxyethyl)-1- piperazinyl)]-2-methyl-4-pyrimidinyl]amino)]-1,3-thiazole-5-carboxamide (dasatinib, BMS-354825) as a potent pan-Src kinase inhibitor.

Authors:  Jagabandhu Das; Ping Chen; Derek Norris; Ramesh Padmanabha; James Lin; Robert V Moquin; Zhongqi Shen; Lynda S Cook; Arthur M Doweyko; Sidney Pitt; Suhong Pang; Ding Ren Shen; Qiong Fang; Henry F de Fex; Kim W McIntyre; David J Shuster; Kathleen M Gillooly; Kamelia Behnia; Gary L Schieven; John Wityak; Joel C Barrish
Journal:  J Med Chem       Date:  2006-11-16       Impact factor: 7.446

8.  1H, 15N, and 13C resonance assignments of the intrinsically disordered SH4 and Unique domains of Hck.

Authors:  Matthew P Pond; Lydia Blachowicz; Benoît Roux
Journal:  Biomol NMR Assign       Date:  2018-10-04       Impact factor: 0.746

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Authors:  F Walker; J deBlaquiere; A W Burgess
Journal:  J Biol Chem       Date:  1993-09-15       Impact factor: 5.157

10.  Myristoylation and differential palmitoylation of the HCK protein-tyrosine kinases govern their attachment to membranes and association with caveolae.

Authors:  S M Robbins; N A Quintrell; J M Bishop
Journal:  Mol Cell Biol       Date:  1995-07       Impact factor: 4.272

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  3 in total

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Authors:  Frank Heinrich; Que N Van; Frantz Jean-Francois; Andrew G Stephen; Mathias Lösche
Journal:  Biophys J       Date:  2021-08-10       Impact factor: 3.699

2.  Identification of hub genes and transcription factors in patients with rheumatoid arthritis complicated with atherosclerosis.

Authors:  Lu Xiao; Zhou Yang; Shudian Lin
Journal:  Sci Rep       Date:  2022-03-18       Impact factor: 4.379

3.  ReSMAP: Web Server for Predicting Residue-Specific Membrane-Association Propensities of Intrinsically Disordered Proteins.

Authors:  Sanbo Qin; Alan Hicks; Souvik Dey; Ramesh Prasad; Huan-Xiang Zhou
Journal:  Membranes (Basel)       Date:  2022-08-11
  3 in total

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