Literature DB >> 19240333

Mini-beam collimator enables microcrystallography experiments on standard beamlines.

Robert F Fischetti1, Shenglan Xu, Derek W Yoder, Michael Becker, Venugopalan Nagarajan, Ruslan Sanishvili, Mark C Hilgart, Sergey Stepanov, Oleg Makarov, Janet L Smith.   

Abstract

The high-brilliance X-ray beams from undulator sources at third-generation synchrotron facilities are excellent tools for solving crystal structures of important and challenging biological macromolecules and complexes. However, many of the most important structural targets yield crystals that are too small or too inhomogeneous for a ;standard' beam from an undulator source, approximately 25-50 microm (FWHM) in the vertical and 50-100 microm in the horizontal direction. Although many synchrotron facilities have microfocus beamlines for other applications, this capability for macromolecular crystallography was pioneered at ID-13 of the ESRF. The National Institute of General Medical Sciences and National Cancer Institute Collaborative Access Team (GM/CA-CAT) dual canted undulator beamlines at the APS deliver high-intensity focused beams with a minimum focal size of 20 microm x 65 microm at the sample position. To meet growing user demand for beams to study samples of 10 microm or less, a ;mini-beam' apparatus was developed that conditions the focused beam to either 5 microm or 10 microm (FWHM) diameter with high intensity. The mini-beam has a symmetric Gaussian shape in both the horizontal and vertical directions, and reduces the vertical divergence of the focused beam by 25%. Significant reduction in background was achieved by implementation of both forward- and back-scatter guards. A unique triple-collimator apparatus, which has been in routine use on both undulator beamlines since February 2008, allows users to rapidly interchange the focused beam and conditioned mini-beams of two sizes with a single mouse click. The device and the beam are stable over many hours of routine operation. The rapid-exchange capability has greatly facilitated sample screening and resulted in several structures that could not have been obtained with the larger focused beam.

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Year:  2009        PMID: 19240333      PMCID: PMC2725011          DOI: 10.1107/S0909049508040612

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  21 in total

1.  Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.

Authors:  Timothy M McPhillips; Scott E McPhillips; Hsiu-Ju Chiu; Aina E Cohen; Ashley M Deacon; Paul J Ellis; Elspeth Garman; Ana Gonzalez; Nicholas K Sauter; R Paul Phizackerley; S Michael Soltis; Peter Kuhn
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  How does radiation damage in protein crystals depend on X-ray dose?

Authors:  Piotr Sliz; Stephen C Harrison; Gerd Rosenbaum
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

3.  Multi-segmented piezoelectric mirrors as active/adaptive optics components.

Authors:  R Signorato; O Hignette; J Goulon
Journal:  J Synchrotron Radiat       Date:  1998-05-01       Impact factor: 2.616

4.  Structure of the cross-beta spine of amyloid-like fibrils.

Authors:  Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

5.  Single-bounce monocapillaries for focusing synchrotron radiation: modeling, measurements and theoretical limits.

Authors:  Rong Huang; Donald H Bilderback
Journal:  J Synchrotron Radiat       Date:  2005-12-22       Impact factor: 2.616

6.  The molecular organization of cypovirus polyhedra.

Authors:  Fasséli Coulibaly; Elaine Chiu; Keiko Ikeda; Sascha Gutmann; Peter W Haebel; Clemens Schulze-Briese; Hajime Mori; Peter Metcalf
Journal:  Nature       Date:  2007-03-01       Impact factor: 49.962

7.  High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.

Authors:  Vadim Cherezov; Daniel M Rosenbaum; Michael A Hanson; Søren G F Rasmussen; Foon Sun Thian; Tong Sun Kobilka; Hee-Jung Choi; Peter Kuhn; William I Weis; Brian K Kobilka; Raymond C Stevens
Journal:  Science       Date:  2007-10-25       Impact factor: 47.728

8.  Structural basis for translation termination on the 70S ribosome.

Authors:  Martin Laurberg; Haruichi Asahara; Andrei Korostelev; Jianyu Zhu; Sergei Trakhanov; Harry F Noller
Journal:  Nature       Date:  2008-07-02       Impact factor: 49.962

9.  Coexpression, copurification, crystallization and preliminary X-ray analysis of a complex of ARL2-GTP and PDE delta.

Authors:  L Renault; M Hanzal-Bayer; R C Hillig
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-07-23

10.  Crystal structure of the human beta2 adrenergic G-protein-coupled receptor.

Authors:  Søren G F Rasmussen; Hee-Jung Choi; Daniel M Rosenbaum; Tong Sun Kobilka; Foon Sun Thian; Patricia C Edwards; Manfred Burghammer; Venkata R P Ratnala; Ruslan Sanishvili; Robert F Fischetti; Gebhard F X Schertler; William I Weis; Brian K Kobilka
Journal:  Nature       Date:  2007-10-21       Impact factor: 49.962

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  49 in total

1.  Canadian macromolecular crystallography facility: a suite of fully automated beamlines.

Authors:  Pawel Grochulski; Michel Fodje; Shaunivan Labiuk; James Gorin; Kathryn Janzen; Russ Berg
Journal:  J Struct Funct Genomics       Date:  2012-01-21

2.  Structural and functional analysis of an essential nucleoporin heterotrimer on the cytoplasmic face of the nuclear pore complex.

Authors:  Kimihisa Yoshida; Hyuk-Soo Seo; Erik W Debler; Günter Blobel; André Hoelz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-19       Impact factor: 11.205

3.  Structural Similarities and Differences between Two Functionally Distinct SecA Proteins, Mycobacterium tuberculosis SecA1 and SecA2.

Authors:  Stephanie Swanson; Thomas R Ioerger; Nathan W Rigel; Brittany K Miller; Miriam Braunstein; James C Sacchettini
Journal:  J Bacteriol       Date:  2015-12-14       Impact factor: 3.490

4.  Host Lipid and Temperature as Important Screening Variables for Crystallizing Integral Membrane Proteins in Lipidic Mesophases. Trials with Diacylglycerol Kinase.

Authors:  Dianfan Li; Syed T A Shah; Martin Caffrey
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

Review 5.  Rastering strategy for screening and centring of microcrystal samples of human membrane proteins with a sub-10 microm size X-ray synchrotron beam.

Authors:  Vadim Cherezov; Michael A Hanson; Mark T Griffith; Mark C Hilgart; Ruslan Sanishvili; Venugopalan Nagarajan; Sergey Stepanov; Robert F Fischetti; Peter Kuhn; Raymond C Stevens
Journal:  J R Soc Interface       Date:  2009-06-17       Impact factor: 4.118

6.  JBluIce-EPICS control system for macromolecular crystallography.

Authors:  Sergey Stepanov; Oleg Makarov; Mark Hilgart; Sudhir Babu Pothineni; Alex Urakhchin; Satish Devarapalli; Derek Yoder; Michael Becker; Craig Ogata; Ruslan Sanishvili; Nagarajan Venugopalan; Janet L Smith; Robert F Fischetti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-02-15

7.  Fast fluorescence techniques for crystallography beamlines.

Authors:  Sergey Stepanov; Mark Hilgart; Derek W Yoder; Oleg Makarov; Michael Becker; Ruslan Sanishvili; Craig M Ogata; Nagarajan Venugopalan; David Aragão; Martin Caffrey; Janet L Smith; Robert F Fischetti
Journal:  J Appl Crystallogr       Date:  2011-06-08       Impact factor: 3.304

Review 8.  Structural insights into adrenergic receptor function and pharmacology.

Authors:  Brian K Kobilka
Journal:  Trends Pharmacol Sci       Date:  2011-03-15       Impact factor: 14.819

9.  Crystallization and preliminary X-ray analysis of the Plasmodium falciparum apicoplast DNA polymerase.

Authors:  Morgan E Milton; Jun-yong Choe; Richard B Honzatko; Scott W Nelson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-02-19       Impact factor: 1.056

10.  An Improved Strategy for Fluorescent Tagging of Membrane Proteins for Overexpression and Purification in Mammalian Cells.

Authors:  Mitra S Rana; Xiyu Wang; Anirban Banerjee
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

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