Literature DB >> 25271319

Solid-to-fluid-like DNA transition in viruses facilitates infection.

Ting Liu1, Udom Sae-Ueng1, Dong Li1, Gabriel C Lander2, Xiaobing Zuo3, Bengt Jönsson4, Donald Rau5, Ivetta Shefer1, Alex Evilevitch6.   

Abstract

Releasing the packaged viral DNA into the host cell is an essential process to initiate viral infection. In many double-stranded DNA bacterial viruses and herpesviruses, the tightly packaged genome is hexagonally ordered and stressed in the protein shell, called the capsid. DNA condensed in this state inside viral capsids has been shown to be trapped in a glassy state, with restricted molecular motion in vitro. This limited intracapsid DNA mobility is caused by the sliding friction between closely packaged DNA strands, as a result of the repulsive interactions between the negative charges on the DNA helices. It had been unclear how this rigid crystalline structure of the viral genome rapidly ejects from the capsid, reaching rates of 60,000 bp/s. Through a combination of single-molecule and bulk techniques, we determined how the structure and energy of the encapsidated DNA in phage λ regulates the mobility required for its ejection. Our data show that packaged λ-DNA undergoes a solid-to-fluid-like disordering transition as a function of temperature, resulting locally in less densely packed DNA, reducing DNA-DNA repulsions. This process leads to a significant increase in genome mobility or fluidity, which facilitates genome release at temperatures close to that of viral infection (37 °C), suggesting a remarkable physical adaptation of bacterial viruses to the environment of Escherichia coli cells in a human host.

Entities:  

Keywords:  AFM; DNA ejection; DNA fluidity; intracapsid DNA transition; isothermal titration calorimetry

Mesh:

Substances:

Year:  2014        PMID: 25271319      PMCID: PMC4205597          DOI: 10.1073/pnas.1321637111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

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  14 in total

1.  Influence of Microscopic Interactions on the Flexible Mechanical Properties of Viral DNA.

Authors:  Cheng-Yin Zhang; Neng-Hui Zhang
Journal:  Biophys J       Date:  2018-08-04       Impact factor: 4.033

Review 2.  Bacteriophage lambda: Early pioneer and still relevant.

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Review 3.  Studying viruses using solution X-ray scattering.

Authors:  Daniel Khaykelson; Uri Raviv
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5.  Ionic switch controls the DNA state in phage λ.

Authors:  Dong Li; Ting Liu; Xiaobing Zuo; Tao Li; Xiangyun Qiu; Alex Evilevitch
Journal:  Nucleic Acids Res       Date:  2015-06-19       Impact factor: 16.971

6.  Influence of Internal DNA Pressure on Stability and Infectivity of Phage λ.

Authors:  D W Bauer; A Evilevitch
Journal:  J Mol Biol       Date:  2015-08-05       Impact factor: 5.469

7.  The structure and intermolecular forces of DNA condensates.

Authors:  Jejoong Yoo; Aleksei Aksimentiev
Journal:  Nucleic Acids Res       Date:  2016-02-15       Impact factor: 16.971

8.  Temperature and pH dependence of DNA ejection from archaeal lemon-shaped virus His1.

Authors:  K J Hanhijärvi; G Ziedaite; E Hæggström; D H Bamford
Journal:  Eur Biophys J       Date:  2016-01-28       Impact factor: 1.733

9.  Pan-retroviral Nucleocapsid-Mediated Phase Separation Regulates Genomic RNA Positioning and Trafficking.

Authors:  Anne Monette; Meijuan Niu; Lois Chen; Shringar Rao; Robert James Gorelick; Andrew John Mouland
Journal:  Cell Rep       Date:  2020-04-21       Impact factor: 9.423

10.  C22 podovirus infectivity is associated with intermediate stiffness.

Authors:  Udom Sae-Ueng; Anjana Bhunchoth; Namthip Phironrit; Alongkot Treetong; Chaweewan Sapcharoenkun; Orawan Chatchawankanphanich; Ubolsree Leartsakulpanich; Penchit Chitnumsub
Journal:  Sci Rep       Date:  2020-07-28       Impact factor: 4.379

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