Literature DB >> 1540694

Direct measurement of temperature-dependent solvation forces between DNA double helices.

D C Rau1, V A Parsegian.   

Abstract

The assembly of double stranded DNA helices with divalent manganese ion is favored by increasing temperature. Direct force measurements, obtained from the osmotic stress technique coupled with x-ray diffraction, show that the force characteristics of spontaneously precipitated Mn(2+)-DNA closely resemble those observed previously by us for other counterion condensed DNA assemblies. At temperatures below the critical one for spontaneous assembly, we have quantitated the changes in entropy and manganese ion binding associated with the transition from repulsive to attractive interactions between helices mediated by osmotic stress. The release of structured water surrounding the DNA helix to the bulk solution is the most probable source of increased entropy after assembly. Increasing the water entropy of the bulk solution by changing the manganese salt anion from CI- to ClO4- predictably and quantitatively increases the transition entropy. This is further evidence for the dominating role of water in the close interaction of polar surfaces.

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Year:  1992        PMID: 1540694      PMCID: PMC1260239          DOI: 10.1016/S0006-3495(92)81832-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

2.  Polymer inaccessible volume changes during opening and closing of a voltage-dependent ionic channel.

Authors:  J Zimmerberg; V A Parsegian
Journal:  Nature       Date:  1986 Sep 4-10       Impact factor: 49.962

3.  Measured entropy and enthalpy of hydration as a function of distance between DNA double helices.

Authors: 
Journal:  Phys Rev A       Date:  1991-10-15       Impact factor: 3.140

4.  Osmotic stress for the direct measurement of intermolecular forces.

Authors:  V A Parsegian; R P Rand; N L Fuller; D C Rau
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

5.  A 200 base pair region at the 5' end of the chicken adult beta-globin gene is accessible to nuclease digestion.

Authors:  J D McGhee; W I Wood; M Dolan; J D Engel; G Felsenfeld
Journal:  Cell       Date:  1981-11       Impact factor: 41.582

Review 6.  The Hofmeister effect and the behaviour of water at interfaces.

Authors:  K D Collins; M W Washabaugh
Journal:  Q Rev Biophys       Date:  1985-11       Impact factor: 5.318

7.  Interactions of DNA with divalent metal ions. I. 31P-NMR studies.

Authors:  J Granot; J Feigon; D R Kearns
Journal:  Biopolymers       Date:  1982-01       Impact factor: 2.505

8.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

9.  Direct measurement of forces between linear polysaccharides xanthan and schizophyllan.

Authors:  D C Rau; V A Parsegian
Journal:  Science       Date:  1990-09-14       Impact factor: 47.728

10.  Chemical potential measurements of deoxyhemoglobin S polymerization. Determination of the phase diagram of an assembling protein.

Authors:  M S Prouty; A N Schechter; V A Parsegian
Journal:  J Mol Biol       Date:  1985-08-05       Impact factor: 5.469

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  48 in total

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Authors:  H M Harreis; C N Likos; H Löwen
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Onset of DNA aggregation in presence of monovalent and multivalent counterions.

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Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

Review 3.  DNA toroids: framework for DNA repair in Deinococcus radiodurans and in germinating bacterial spores.

Authors:  Joseph Englander; Eugenia Klein; Vlad Brumfeld; Ajay K Sharma; Aidan J Doherty; Abraham Minsky
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

4.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

5.  Hexamminecobalt(III)-induced condensation of calf thymus DNA: circular dichroism and hydration measurements.

Authors:  B I Kankia; V Buckin; V A Bloomfield
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

6.  Internal DNA pressure modifies stability of WT phage.

Authors:  Irena Ivanovska; Gijs Wuite; Bengt Jönsson; Alex Evilevitch
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

7.  Stuffing a virus with DNA: dissecting viral genome packaging.

Authors:  Mark C Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-26       Impact factor: 11.205

8.  A mesoscale model of DNA and its renaturation.

Authors:  E J Sambriski; D C Schwartz; J J de Pablo
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

9.  Sequence effects in the melting and renaturation of short DNA oligonucleotides: structure and mechanistic pathways.

Authors:  E J Sambriski; V Ortiz; J J de Pablo
Journal:  J Phys Condens Matter       Date:  2008-12-17       Impact factor: 2.333

Review 10.  Importance of diffuse metal ion binding to RNA.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Met Ions Life Sci       Date:  2011
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