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Literature DB >> 25221441

PROBING SINGLE DNA MOLECULE TRANSPORT USING FABRICATED NANOPORES.

Peng Chen¹, Jiajun Gu², Eric Brandin¹, Young-Rok Kim¹, Qiao Wang³, Daniel Branton¹.

Abstract

Nanopores can serve as high throughput, single molecule sensing devices that provide insight into the distribution of static and dynamic molecular activities, properties, or interactions. We have studied double stranded DNA electrophoretic transport dynamics through fabricated nanopores in silicon nitride. A fabricated pore enables us to interrogate a broader range of molecules with a wider range of conditions than can be investigated in a self-assembled protein pore in a lipid membrane.

Entities: Chemical

Year: 2004 PMID： 25221441 PMCID： PMC4160839 DOI： 10.1021/nl048654j

Source DB: PubMed Journal: Nano Lett ISSN： 1530-6984 Impact factor: 11.189

21 in total

Review 1. Theory of DNA electrophoresis: a look at some current challenges.

Authors: G W Slater; C Desruisseaux; S J Hubert; J F Mercier; J Labrie; J Boileau; F Tessier; M P Pépin
Journal: Electrophoresis Date: 2000-12 Impact factor: 3.535

2. Ion-beam sculpting at nanometre length scales.

Authors: J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal: Nature Date: 2001-07-12 Impact factor: 49.962

3. Diffusion coefficient of DNA molecules during free solution electrophoresis.

Authors: A E Nkodo; J M Garnier; B Tinland; H Ren; C Desruisseaux; L C McCormick; G Drouin; G W Slater
Journal: Electrophoresis Date: 2001-08 Impact factor: 3.535

4. Dynamics of DNA molecules in a membrane channel probed by active control techniques.

Authors: Mark Bates; Michael Burns; Amit Meller
Journal: Biophys J Date: 2003-04 Impact factor: 4.033

5. Rapid nanopore discrimination between single polynucleotide molecules.

Authors: A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal: Proc Natl Acad Sci U S A Date: 2000-02-01 Impact factor: 11.205

6. Fabrication of solid-state nanopores with single-nanometre precision.

Authors: A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal: Nat Mater Date: 2003-08 Impact factor: 43.841

7. Characterization of individual polynucleotide molecules using a membrane channel.

Authors: J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal: Proc Natl Acad Sci U S A Date: 1996-11-26 Impact factor: 11.205

8. Atomic Layer Deposition to Fine-Tune the Surface Properties and Diameters of Fabricated Nanopores.

Authors: Peng Chen; Toshiyuki Mitsui; Damon B Farmer; Jene Golovchenko; Roy G Gordon; Daniel Branton
Journal: Nano Lett Date: 2004-06-25 Impact factor: 11.189

9. Single polymer dynamics in an elongational flow.

Authors: T T Perkins; D E Smith; S Chu
Journal: Science Date: 1997-06-27 Impact factor: 47.728

10. The free solution mobility of DNA.

Authors: N C Stellwagen; C Gelfi; P G Righetti
Journal: Biopolymers Date: 1997-11 Impact factor: 2.505

84 in total

1. Focused ion beam induced deflections of freestanding thin films.

Authors: Y-R Kim; P Chen; M J Aziz; D Branton; J J Vlassak
Journal: J Appl Phys Date: 2006-11-15 Impact factor: 2.546

2. DNA translocation through an array of kinked nanopores.

Authors: Zhu Chen; Yingbing Jiang; Darren R Dunphy; David P Adams; Carter Hodges; Nanguo Liu; Nan Zhang; George Xomeritakis; Xiaozhong Jin; N R Aluru; Steven J Gaik; Hugh W Hillhouse; C Jeffrey Brinker
Journal: Nat Mater Date: 2010-08 Impact factor: 43.841

PROBING SINGLE DNA MOLECULE TRANSPORT USING FABRICATED NANOPORES.

Review 1. Theory of DNA electrophoresis: a look at some current challenges.

2. Ion-beam sculpting at nanometre length scales.

3. Diffusion coefficient of DNA molecules during free solution electrophoresis.

4. Dynamics of DNA molecules in a membrane channel probed by active control techniques.

5. Rapid nanopore discrimination between single polynucleotide molecules.

6. Fabrication of solid-state nanopores with single-nanometre precision.

7. Characterization of individual polynucleotide molecules using a membrane channel.

8. Atomic Layer Deposition to Fine-Tune the Surface Properties and Diameters of Fabricated Nanopores.

9. Single polymer dynamics in an elongational flow.

10. The free solution mobility of DNA.

1. Focused ion beam induced deflections of freestanding thin films.

2. DNA translocation through an array of kinked nanopores.

3. Theory of capture rate in polymer translocation.

4. Cooperative translocation dynamics of biopolymer chains through nanopores in a membrane: Slow dynamics limit.

5. Deciphering ionic current signatures of DNA transport through a nanopore.

6. Detecting single stranded DNA with a solid state nanopore.

7. Slowing DNA translocation in a solid-state nanopore.

8. Fast DNA sequencing via transverse electronic transport.

9. Enzyme-modulated DNA translocation through a nanopore.

10. Electro-osmotic screening of the DNA charge in a nanopore.