Literature DB >> 21069554

Cooperative translocation dynamics of biopolymer chains through nanopores in a membrane: Slow dynamics limit.

Hai-Jun Wang1, Fang Gu, Xiao-Zhong Hong, Xin-Wu Ba.   

Abstract

The cooperative translocation dynamics of two complementary single-stranded DNA chains through two nanopores located in a membrane is investigated theoretically. The translocation process is considered to be quasi-equilibrium, and then under the limit of slow dynamics the average translocation times are numerically presented under different conditions. It is shown that the effects of the chemical potential gradient, the recombination energy and the distance between the two nanopores on the cooperative translocation are significant. The present model predicts that the cooperative translocation of such two chains can shorten the translocation time, reduce the backward motion and thus improve the translocation efficiency.

Mesh:

Substances:

Year:  2010        PMID: 21069554     DOI: 10.1140/epje/i2010-10663-6

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  41 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Polymer Translocation through a Pore in a Membrane.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-07-22       Impact factor: 9.161

3.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

4.  Translocation of double-strand DNA through a silicon oxide nanopore.

Authors:  A J Storm; J H Chen; H W Zandbergen; C Dekker
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-06

5.  A Monte Carlo algorithm to study polymer translocation through nanopores. I. Theory and numerical approach.

Authors:  Michel G Gauthier; Gary W Slater
Journal:  J Chem Phys       Date:  2008-02-14       Impact factor: 3.488

6.  Sequence dependence of DNA translocation through a nanopore.

Authors:  Kaifu Luo; Tapio Ala-Nissila; See-Chen Ying; Aniket Bhattacharya
Journal:  Phys Rev Lett       Date:  2008-02-05       Impact factor: 9.161

7.  Dynamics of DNA translocation through an attractive nanopore.

Authors:  Kaifu Luo; Tapio Ala-Nissila; See-Chen Ying; Aniket Bhattacharya
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-12-09

8.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

9.  Langevin dynamics simulations of polymer translocation through nanopores.

Authors:  Ilkka Huopaniemi; Kaifu Luo; Tapio Ala-Nissila; See-Chen Ying
Journal:  J Chem Phys       Date:  2006-09-28       Impact factor: 3.488

10.  Relaxation kinetics of dimer formation by self complementary oligonucleotides.

Authors:  M E Craig; D M Crothers; P Doty
Journal:  J Mol Biol       Date:  1971-12-14       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.