Literature DB >> 16608283

Fast DNA sequencing via transverse electronic transport.

Johan Lagerqvist1, Michael Zwolak, Massimiliano Di Ventra.   

Abstract

A rapid and low-cost method to sequence DNA would usher in a revolution in medicine. We propose and theoretically show the feasibility of a protocol for sequencing based on the distributions of transverse electrical currents of single-stranded DNA while it translocates through a nanopore. Our estimates, based on the statistics of these distributions, reveal that sequencing of an entire human genome could be done with very high accuracy in a matter of hours without parallelization, that is, orders of magnitude faster than present techniques. The practical implementation of our approach would represent a substantial advancement in our ability to study, predict, and cure diseases from the perspective of the genetic makeup of each individual.

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Year:  2006        PMID: 16608283      PMCID: PMC2556950          DOI: 10.1021/nl0601076

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  26 in total

1.  Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel.

Authors:  W Vercoutere; S Winters-Hilt; H Olsen; D Deamer; D Haussler; M Akeson
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

2.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

4.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

5.  Conical nanopore membranes. Preparation and transport properties.

Authors:  Naichao Li; Shufang Yu; C Chad Harrell; Charles R Martin
Journal:  Anal Chem       Date:  2004-04-01       Impact factor: 6.986

6.  Effect of electron-phonon scattering on shot noise in nanoscale junctions.

Authors:  Yu-Chang Chen; Massimiliano Di Ventra
Journal:  Phys Rev Lett       Date:  2005-10-12       Impact factor: 9.161

7.  Detecting single stranded DNA with a solid state nanopore.

Authors:  Daniel Fologea; Marc Gershow; Bradley Ledden; David S McNabb; Jene A Golovchenko; Jiali Li
Journal:  Nano Lett       Date:  2005-10       Impact factor: 11.189

Review 8.  Advances in sequencing technology.

Authors:  Eugene Y Chan
Journal:  Mutat Res       Date:  2005-06-03       Impact factor: 2.433

9.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

10.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

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  82 in total

1.  Single molecule transcription profiling with AFM.

Authors:  Jason Reed; Bud Mishra; Bede Pittenger; Sergei Magonov; Joshua Troke; Michael A Teitell; James K Gimzewski
Journal:  Nanotechnology       Date:  2007-05-09       Impact factor: 3.874

2.  Identifying single nucleotides by tunnelling current.

Authors:  Makusu Tsutsui; Masateru Taniguchi; Kazumichi Yokota; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2010-03-21       Impact factor: 39.213

3.  Synchronous optical and electrical detection of biomolecules traversing through solid-state nanopores.

Authors:  Gautam V Soni; Alon Singer; Zhiliang Yu; Yingjie Sun; Ben McNally; Amit Meller
Journal:  Rev Sci Instrum       Date:  2010-01       Impact factor: 1.523

4.  Nanobiotechnology: sequencing at the end of the tunnel.

Authors:  Massimiliano Di Ventra
Journal:  Nat Nanotechnol       Date:  2010-11-14       Impact factor: 39.213

5.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

Review 6.  Decoding DNA, RNA and peptides with quantum tunnelling.

Authors:  Massimiliano Di Ventra; Masateru Taniguchi
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

7.  Detection of DNA sequences using an alternating electric field in a nanopore capacitor.

Authors:  Grigori Sigalov; Jeffrey Comer; Gregory Timp; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2007-12-11       Impact factor: 11.189

8.  Influence of the environment and probes on rapid DNA sequencing via transverse electronic transport.

Authors:  Johan Lagerqvist; Michael Zwolak; Massimiliano Di Ventra
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

9.  Nanotechnologies applied to the analysis of the animal genome.

Authors:  P Ajmone Marsan; S Tramontana; R Mazza
Journal:  Vet Res Commun       Date:  2007-08       Impact factor: 2.459

Review 10.  Existing and emerging technologies for tumor genomic profiling.

Authors:  Laura E MacConaill
Journal:  J Clin Oncol       Date:  2013-04-15       Impact factor: 44.544

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