Literature DB >> 25217909

Accurate measurement of heteronuclear dipolar couplings by phase-alternating R-symmetry (PARS) sequences in magic angle spinning NMR spectroscopy.

Guangjin Hou1, Xingyu Lu1, Alexander J Vega1, Tatyana Polenova1.   

Abstract

We report a Phase-Alternating R-Symmetry (PARS) dipolar recoupling scheme for accurate measurement of heteronuclear (1)H-X (X = (13)C, (15)N, (31)P, etc.) dipolar couplings in MAS NMR experiments. It is an improvement of conventional C- and R-symmetry type DIPSHIFT experiments where, in addition to the dipolar interaction, the (1)H CSA interaction persists and thereby introduces considerable errors in the dipolar measurements. In PARS, phase-shifted RN symmetry pulse blocks applied on the (1)H spins combined with π pulses applied on the X spins at the end of each RN block efficiently suppress the effect from (1)H chemical shift anisotropy, while keeping the (1)H-X dipolar couplings intact. Another advantage over conventional DIPSHIFT experiments, which require the signal to be detected in the form of a reduced-intensity Hahn echo, is that the series of π pulses refocuses the X chemical shift and avoids the necessity of echo formation. PARS permits determination of accurate dipolar couplings in a single experiment; it is suitable for a wide range of MAS conditions including both slow and fast MAS frequencies; and it assures dipolar truncation from the remote protons. The performance of PARS is tested on two model systems, [(15)N]-N-acetyl-valine and [U-(13)C,(15)N]-N-formyl-Met-Leu-Phe tripeptide. The application of PARS for site-resolved measurement of accurate (1)H-(15)N dipolar couplings in the context of 3D experiments is presented on U-(13)C,(15)N-enriched dynein light chain protein LC8.

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Year:  2014        PMID: 25217909      PMCID: PMC4162908          DOI: 10.1063/1.4894226

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  28 in total

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Authors:  J Meiler; J J Prompers; W Peti; C Griesinger; R Brüschweiler
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2.  Heteronuclear dipolar recoupling in multiple-spin system under fast magic-angle spinning.

Authors:  Fang-Chieh Chou; Shing-Jong Huang; Jerry C C Chan
Journal:  J Magn Reson       Date:  2008-12-03       Impact factor: 2.229

3.  Windowed R-PDLF recoupling: a flexible and reliable tool to characterize molecular dynamics.

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Journal:  J Magn Reson       Date:  2013-07-01       Impact factor: 2.229

4.  Magic angle spinning NMR experiments for structural studies of differentially enriched protein interfaces and protein assemblies.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2008-04-08       Impact factor: 15.419

5.  An improved broadband decoupling sequence for liquid crystals and solids.

Authors:  B M Fung; A K Khitrin; K Ermolaev
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

6.  Solid-state NMR investigation of the dynamics of the soluble and membrane-bound colicin Ia channel-forming domain.

Authors:  D Huster; L Xiao; M Hong
Journal:  Biochemistry       Date:  2001-06-26       Impact factor: 3.162

7.  Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis.

Authors:  W Trent Franks; Donghua H Zhou; Benjamin J Wylie; Brian G Money; Daniel T Graesser; Heather L Frericks; Gurmukh Sahota; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

8.  Resonance Assignments and Secondary Structure Analysis of Dynein Light Chain 8 by Magic Angle Spinning NMR Spectroscopy.

Authors:  Shangjin Sun; Andrew H Butterworth; Sivakumar Paramasivam; Si Yan; Christine M Lightcap; John C Williams; Tatyana Polenova
Journal:  Can J Chem       Date:  2011-08-04       Impact factor: 1.118

9.  Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy.

Authors:  David S Thiriot; Alexander A Nevzorov; Lena Zagyanskiy; Chin H Wu; Stanley J Opella
Journal:  J Mol Biol       Date:  2004-08-13       Impact factor: 5.469

10.  Accurate determination of order parameters from 1H,15N dipolar couplings in MAS solid-state NMR experiments.

Authors:  Veniamin Chevelkov; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

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  15 in total

1.  Expanding the horizons for structural analysis of fully protonated protein assemblies by NMR spectroscopy at MAS frequencies above 100 kHz.

Authors:  Jochem Struppe; Caitlin M Quinn; Manman Lu; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Jodi Kraus; Loren B Andreas; Jan Stanek; Daniela Lalli; Anne Lesage; Guido Pintacuda; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Solid State Nucl Magn Reson       Date:  2017-07-03       Impact factor: 2.293

2.  Determination of methyl order parameters using solid state NMR under off magic angle spinning.

Authors:  Kai Xue; Salvatore Mamone; Benita Koch; Riddhiman Sarkar; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

Review 3.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

4.  Toward Closing the Gap: Quantum Mechanical Calculations and Experimentally Measured Chemical Shifts of a Microcrystalline Lectin.

Authors:  Matthew Fritz; Caitlin M Quinn; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Leonardus M I Koharudin; Tatyana Polenova; Angela M Gronenborn
Journal:  J Phys Chem B       Date:  2016-12-21       Impact factor: 2.991

5.  Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 kDa Enzyme by Specific 1H-13C Labeling and Fast Magic-Angle Spinning NMR.

Authors:  Diego F Gauto; Pavel Macek; Alessandro Barducci; Hugo Fraga; Audrey Hessel; Tsutomu Terauchi; David Gajan; Yohei Miyanoiri; Jerome Boisbouvier; Roman Lichtenecker; Masatsune Kainosho; Paul Schanda
Journal:  J Am Chem Soc       Date:  2019-07-05       Impact factor: 15.419

6.  Proton-detected 3D (15)N/(1)H/(1)H isotropic/anisotropic/isotropic chemical shift correlation solid-state NMR at 70kHz MAS.

Authors:  Manoj Kumar Pandey; Jayasubba Reddy Yarava; Rongchun Zhang; Ayyalusamy Ramamoorthy; Yusuke Nishiyama
Journal:  Solid State Nucl Magn Reson       Date:  2016-03-16       Impact factor: 2.293

7.  Chemical Shifts of the Carbohydrate Binding Domain of Galectin-3 from Magic Angle Spinning NMR and Hybrid Quantum Mechanics/Molecular Mechanics Calculations.

Authors:  Jodi Kraus; Rupal Gupta; Jenna Yehl; Manman Lu; David A Case; Angela M Gronenborn; Mikael Akke; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2018-03-13       Impact factor: 2.991

8.  RF inhomogeneity and how it controls CPMAS.

Authors:  Rupal Gupta; Guangjin Hou; Tatyana Polenova; Alexander J Vega
Journal:  Solid State Nucl Magn Reson       Date:  2015-09-25       Impact factor: 2.293

Review 9.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

10.  Improving dipolar recoupling for site-specific structural and dynamics studies in biosolids NMR: windowed RN-symmetry sequences.

Authors:  Xingyu Lu; Huilan Zhang; Manman Lu; Alexander J Vega; Guangjin Hou; Tatyana Polenova
Journal:  Phys Chem Chem Phys       Date:  2016-01-18       Impact factor: 3.676

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