Literature DB >> 25210030

Massive thermal acceleration of the emergence of primordial chemistry, the incidence of spontaneous mutation, and the evolution of enzymes.

Richard Wolfenden1.   

Abstract

Kelvin considered it unlikely that sufficient time had elapsed on the earth for life to have reached its present level of complexity. In the warm surroundings in which life first appeared, however, elevated temperatures would have reduced the kinetic barriers to reaction. Recent experiments disclose the profound extent to which very slow reactions are accelerated by elevated temperatures, collapsing the time that would have been required for early events in primordial chemistry before the advent of enzymes. If a primitive enzyme, like model catalysts and most modern enzymes, accelerated a reaction by lowering its enthalpy of activation, then the rate enhancement that it produced would have increased automatically as the environment cooled, quite apart from any improvements in catalytic activity that arose from mutation and natural selection. The chemical events responsible for spontaneous mutation are also highly sensitive to temperature, furnishing an independent mechanism for accelerating evolution.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Keywords:  Energy of Activation; Enzyme; Enzyme Catalysis; Enzyme Inhibitor; Enzyme Mechanism; Heat of Activation; Spontaneous Mutation; Tempo of Mutation; Thermodynamics

Mesh:

Substances:

Year:  2014        PMID: 25210030      PMCID: PMC4215203          DOI: 10.1074/jbc.R114.567081

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  27 in total

1.  Evolution of shape complementarity and catalytic efficiency from a primordial antibody template.

Authors:  J Xu; Q Deng; J Chen; K N Houk; J Bartek; D Hilvert; I A Wilson
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

2.  Temperature effects on the catalytic efficiency, rate enhancement, and transition state affinity of cytidine deaminase, and the thermodynamic consequences for catalysis of removing a substrate "anchor".

Authors:  M J Snider; S Gaunitz; C Ridgway; S A Short; R Wolfenden
Journal:  Biochemistry       Date:  2000-08-15       Impact factor: 3.162

3.  The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence.

Authors:  Massimo Di Giulio
Journal:  J Theor Biol       Date:  2003-04-07       Impact factor: 2.691

4.  Impact of temperature on the time required for the establishment of primordial biochemistry, and for the evolution of enzymes.

Authors:  Randy B Stockbridge; Charles A Lewis; Yang Yuan; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-01       Impact factor: 11.205

5.  Metal ion inhibition of nonenzymatic pyridoxal phosphate catalyzed decarboxylation and transamination.

Authors:  R F Zabinski; M D Toney
Journal:  J Am Chem Soc       Date:  2001-01-17       Impact factor: 15.419

6.  The rate enhancement produced by the ribosome: an improved model.

Authors:  Gottfried K Schroeder; Richard Wolfenden
Journal:  Biochemistry       Date:  2007-03-13       Impact factor: 3.162

7.  Kinetics of phosphodiester cleavage by differently generated cerium(IV) hydroxo species in neutral solutions.

Authors:  Ana L Maldonado; Anatoly K Yatsimirsky
Journal:  Org Biomol Chem       Date:  2005-07-01       Impact factor: 3.876

8.  The rate of hydrolysis of phosphomonoester dianions and the exceptional catalytic proficiencies of protein and inositol phosphatases.

Authors:  Chetan Lad; Nicholas H Williams; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-29       Impact factor: 11.205

9.  Experimental evidence for the thermophilicity of ancestral life.

Authors:  Satoshi Akanuma; Yoshiki Nakajima; Shin-ichi Yokobori; Mitsuo Kimura; Naoki Nemoto; Tomoko Mase; Ken-ichi Miyazono; Masaru Tanokura; Akihiko Yamagishi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

10.  Rates of spontaneous disintegration of DNA and the rate enhancements produced by DNA glycosylases and deaminases.

Authors:  Gottfried K Schroeder; Richard Wolfenden
Journal:  Biochemistry       Date:  2007-11-01       Impact factor: 3.162

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  9 in total

Review 1.  Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes.

Authors:  Matilda S Newton; Vickery L Arcus; Wayne M Patrick
Journal:  J R Soc Interface       Date:  2015-06-06       Impact factor: 4.118

2.  Transition States and transition state analogue interactions with enzymes.

Authors:  Vern L Schramm
Journal:  Acc Chem Res       Date:  2015-04-07       Impact factor: 22.384

3.  Introduction to the thematic minireview series on enzyme evolution.

Authors:  Ruma Banerjee
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

Review 4.  The Classification and Evolution of Enzyme Function.

Authors:  Sergio Martínez Cuesta; Syed Asad Rahman; Nicholas Furnham; Janet M Thornton
Journal:  Biophys J       Date:  2015-05-15       Impact factor: 4.033

5.  The place of RNA in the origin and early evolution of the genetic machinery.

Authors:  Günter Wächtershäuser
Journal:  Life (Basel)       Date:  2014-12-19

6.  Synthetic CO2-fixation enzyme cascades immobilized on self-assembled nanostructures that enhance CO2/O2 selectivity of RubisCO.

Authors:  Sriram Satagopan; Yuan Sun; Jon R Parquette; F Robert Tabita
Journal:  Biotechnol Biofuels       Date:  2017-07-06       Impact factor: 6.040

7.  Efficient Heritable Gene Expression Readily Evolves in RNA Pools.

Authors:  Michael Yarus
Journal:  J Mol Evol       Date:  2017-07-01       Impact factor: 2.395

8.  Linear Eyring Plots Conceal a Change in the Rate-Limiting Step in an Enzyme Reaction.

Authors:  Teresa F G Machado; Tracey M Gloster; Rafael G da Silva
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

9.  Conformational Sampling of the Intrinsically Disordered C-Terminal Tail of DERA Is Important for Enzyme Catalysis.

Authors:  Marianne Schulte; Dušan Petrović; Philipp Neudecker; Rudolf Hartmann; Jörg Pietruszka; Sabine Willbold; Dieter Willbold; Vineet Panwalkar
Journal:  ACS Catal       Date:  2018-03-27       Impact factor: 13.084

  9 in total

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