Literature DB >> 21123742

Impact of temperature on the time required for the establishment of primordial biochemistry, and for the evolution of enzymes.

Randy B Stockbridge1, Charles A Lewis, Yang Yuan, Richard Wolfenden.   

Abstract

All reactions are accelerated by an increase in temperature, but the magnitude of that effect on very slow reactions does not seem to have been fully appreciated. The hydrolysis of polysaccharides, for example, is accelerated 190,000-fold when the temperature is raised from 25 to 100 °C, while the rate of hydrolysis of phosphate monoester dianions increases 10,300,000-fold. Moreover, the slowest reactions tend to be the most heat-sensitive. These tendencies collapse, by as many as five orders of magnitude, the time that would have been required for early chemical evolution in a warm environment. We propose, further, that if the catalytic effect of a "proto-enzyme"--like that of modern enzymes--were mainly enthalpic, then the resulting rate enhancement would have increased automatically as the environment became cooler. Several powerful nonenzymatic catalysts of very slow biological reactions, notably pyridoxal phosphate and the ceric ion, are shown to meet that criterion. Taken together, these findings greatly reduce the time that would have been required for early chemical evolution, countering the view that not enough time has passed for life to have evolved to its present level of complexity.

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Year:  2010        PMID: 21123742      PMCID: PMC3009776          DOI: 10.1073/pnas.1013647107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Authors:  Randy B Stockbridge; Richard Wolfenden
Journal:  J Biol Chem       Date:  2009-06-15       Impact factor: 5.157

Review 4.  A molecular view of microbial diversity and the biosphere.

Authors:  N R Pace
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5.  Efficient aldolase catalytic antibodies that use the enamine mechanism of natural enzymes.

Authors:  J Wagner; R A Lerner; C F Barbas
Journal:  Science       Date:  1995-12-15       Impact factor: 47.728

6.  Phosphate monoester hydrolysis in cyclohexane.

Authors:  Randy B Stockbridge; Richard Wolfenden
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

7.  Metal ion inhibition of nonenzymatic pyridoxal phosphate catalyzed decarboxylation and transamination.

Authors:  R F Zabinski; M D Toney
Journal:  J Am Chem Soc       Date:  2001-01-17       Impact factor: 15.419

8.  The time required for water attack at the phosphorus atom of simple phosphodiesters and of DNA.

Authors:  Gottfried K Schroeder; Chetan Lad; Paul Wyman; Nicholas H Williams; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-06       Impact factor: 11.205

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Journal:  Biochemistry       Date:  1987-03-10       Impact factor: 3.162

10.  Rates of spontaneous cleavage of glucose, fructose, sucrose, and trehalose in water, and the catalytic proficiencies of invertase and trehalas.

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Journal:  J Am Chem Soc       Date:  2008-05-28       Impact factor: 15.419

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  17 in total

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 2.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

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3.  Temperature dependence of amino acid hydrophobicities.

Authors:  Richard Wolfenden; Charles A Lewis; Yang Yuan; Charles W Carter
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-01       Impact factor: 11.205

Review 4.  Massive thermal acceleration of the emergence of primordial chemistry, the incidence of spontaneous mutation, and the evolution of enzymes.

Authors:  Richard Wolfenden
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

Review 5.  Urzymology: experimental access to a key transition in the appearance of enzymes.

Authors:  Charles W Carter
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

6.  Evolutionary drivers of thermoadaptation in enzyme catalysis.

Authors:  Vy Nguyen; Christopher Wilson; Marc Hoemberger; John B Stiller; Roman V Agafonov; Steffen Kutter; Justin English; Douglas L Theobald; Dorothee Kern
Journal:  Science       Date:  2016-12-22       Impact factor: 47.728

7.  Enhancement of the rate of pyrophosphate hydrolysis by nonenzymatic catalysts and by inorganic pyrophosphatase.

Authors:  Randy B Stockbridge; Richard Wolfenden
Journal:  J Biol Chem       Date:  2011-04-01       Impact factor: 5.157

8.  Cytosine deamination and the precipitous decline of spontaneous mutation during Earth's history.

Authors:  Charles A Lewis; Jesse Crayle; Shuntai Zhou; Ronald Swanstrom; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-05       Impact factor: 11.205

9.  Primordial chemistry and enzyme evolution in a hot environment.

Authors:  Richard Wolfenden
Journal:  Cell Mol Life Sci       Date:  2014-03-13       Impact factor: 9.261

10.  Extending enzyme molecular recognition with an expanded amino acid alphabet.

Authors:  Claire L Windle; Katie J Simmons; James R Ault; Chi H Trinh; Adam Nelson; Arwen R Pearson; Alan Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-14       Impact factor: 11.205

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