Literature DB >> 25926697

Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes.

Matilda S Newton1, Vickery L Arcus2, Wayne M Patrick3.   

Abstract

The evolution of enzymes is often viewed as following a smooth and steady trajectory, from barely functional primordial catalysts to the highly active and specific enzymes that we observe today. In this review, we summarize experimental data that suggest a different reality. Modern examples, such as the emergence of enzymes that hydrolyse human-made pesticides, demonstrate that evolution can be extraordinarily rapid. Experiments to infer and resurrect ancient sequences suggest that some of the first organisms present on the Earth are likely to have possessed highly active enzymes. Reconciling these observations, we argue that rapid bursts of strong selection for increased catalytic efficiency are interspersed with much longer periods in which the catalytic power of an enzyme erodes, through neutral drift and selection for other properties such as cellular energy efficiency or regulation. Thus, many enzymes may have already passed their catalytic peaks.
© 2015 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  activity threshold; adaptive evolution; ancestral sequence reconstruction; catalytic efficiency

Mesh:

Substances:

Year:  2015        PMID: 25926697      PMCID: PMC4590496          DOI: 10.1098/rsif.2015.0036

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  80 in total

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8.  Isolation and Characterization of a Pseudomonas sp. That Mineralizes the s-Triazine Herbicide Atrazine.

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9.  Real-time evolution of new genes by innovation, amplification, and divergence.

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  9 in total

1.  Structural and functional innovations in the real-time evolution of new (βα)8 barrel enzymes.

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Review 2.  Quantifying and understanding the fitness effects of protein mutations: Laboratory versus nature.

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3.  Co-occurrence of analogous enzymes determines evolution of a novel (βα)8-isomerase sub-family after non-conserved mutations in flexible loop.

Authors:  Ernesto A Verduzco-Castro; Karolina Michalska; Michael Endres; Ana L Juárez-Vazquez; Lianet Noda-García; Changsoo Chang; Christopher S Henry; Gyorgy Babnigg; Andrzej Joachimiak; Francisco Barona-Gómez
Journal:  Biochem J       Date:  2016-02-29       Impact factor: 3.857

4.  The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.

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Journal:  PLoS One       Date:  2017-05-03       Impact factor: 3.240

Review 5.  Mechanisms of protein evolution.

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Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

6.  Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.

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Journal:  J Biol Chem       Date:  2017-07-18       Impact factor: 5.157

7.  Mechanistic and Evolutionary Insights from the Reciprocal Promiscuity of Two Pyridoxal Phosphate-dependent Enzymes.

Authors:  Valerie W C Soo; Yuliana Yosaatmadja; Christopher J Squire; Wayne M Patrick
Journal:  J Biol Chem       Date:  2016-07-29       Impact factor: 5.157

8.  A major role for noncoding regulatory mutations in the evolution of enzyme activity.

Authors:  David W Loehlin; Jesse R Ames; Kathy Vaccaro; Sean B Carroll
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Review 9.  Upper ocean oxygenation, evolution of RuBisCO and the Phanerozoic succession of phytoplankton.

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  9 in total

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