Literature DB >> 25161557

3-(Adamantan-1-yl)-4-benzyl-1H-1,2,4-triazole-5(4H)-thione.

Fatmah A M Al-Omary1, Hazem A Ghabbour1, Ali A El-Emam2, C S Chidan Kumar3, Hoong-Kun Fun4.   

Abstract

The title compound, C19H23N3S, is a functionalized triazoline-3-thione derivative. The benzyl ring is almost normal to the planar 1,2,4-triazole ring (r.m.s. deviation = 0.007 Å) with a dihedral angle of 86.90 (7)°. In the crystal, molecules are linked by pairs of N-H⋯S hydrogen bonds, forming inversion dimers that enclose R 2 (2)(8) loops. The crystal packing is further stabilized by weak C-H⋯π inter-actions that link adjacent dimeric units into supra-molecular chains extending along the a-axis direction.

Entities:  

Year:  2014        PMID: 25161557      PMCID: PMC4120616          DOI: 10.1107/S1600536814013257

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of adamantane derivatives, see: Lorenzo et al. (2008 ▶); Al-Deeb et al. (2006 ▶); Wang et al. (2013 ▶); El-Emam et al. (2004 ▶); Kadi et al. (2010 ▶); Balzarini et al. (2009 ▶); Protopopova et al. (2005 ▶); Vernier et al. (1969 ▶). For related adamantyl-1,2,4-triazole structures, see: El-Emam et al. (2012 ▶), Al-Tamimi et al. (2013 ▶). For the synthesis of the title compound, see El-Emam & Ibrahim (1991 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C19H23N3S M = 325.46 Triclinic, a = 7.6407 (4) Å b = 10.5150 (5) Å c = 12.3434 (5) Å α = 67.1806 (13)° β = 72.9688 (13)° γ = 70.0695 (14)° V = 844.42 (7) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 293 K 0.60 × 0.48 × 0.34 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.891, T max = 0.937 43581 measured reflections 5166 independent reflections 4651 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.08 5166 reflections 212 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.56 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814013257/sj5408sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013257/sj5408Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814013257/sj5408Isup3.cml CCDC reference: 1007119 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H23N3SZ = 2
Mr = 325.46F(000) = 348
Triclinic, P1Dx = 1.280 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6407 (4) ÅCell parameters from 9608 reflections
b = 10.5150 (5) Åθ = 2.9–30.6°
c = 12.3434 (5) ŵ = 0.20 mm1
α = 67.1806 (13)°T = 293 K
β = 72.9688 (13)°Block, colourless
γ = 70.0695 (14)°0.60 × 0.48 × 0.34 mm
V = 844.42 (7) Å3
Bruker APEXII CCD diffractometer5166 independent reflections
Radiation source: fine-focus sealed tube4651 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 30.6°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.891, Tmax = 0.937k = −15→15
43581 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0747P)2 + 0.1424P] where P = (Fo2 + 2Fc2)/3
5166 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.56 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.05370 (4)0.44991 (3)0.32578 (3)0.03965 (10)
N10.70863 (12)0.63160 (9)0.28216 (7)0.02792 (16)
N20.74865 (14)0.58334 (11)0.45903 (8)0.0360 (2)
N30.57266 (14)0.67716 (11)0.45231 (8)0.0359 (2)
C10.75626 (15)0.49115 (13)0.03402 (10)0.0363 (2)
H1A0.81420.5555−0.03020.044*
C20.71844 (19)0.38114 (15)0.01658 (13)0.0471 (3)
H2A0.75120.3719−0.05930.057*
C30.6325 (2)0.28550 (15)0.11137 (15)0.0522 (3)
H3A0.60730.21180.09950.063*
C40.5840 (2)0.29922 (14)0.22381 (14)0.0497 (3)
H4A0.52530.23490.28760.060*
C50.62220 (17)0.40876 (12)0.24249 (10)0.0390 (2)
H5A0.59030.41690.31870.047*
C60.70774 (13)0.50549 (10)0.14754 (8)0.02895 (19)
C70.75127 (15)0.62875 (11)0.15983 (8)0.03048 (19)
H7A0.88460.62420.12820.037*
H7B0.67930.71750.11130.037*
C80.83679 (14)0.55430 (10)0.35740 (9)0.03030 (19)
C90.54907 (13)0.70511 (10)0.34398 (8)0.02803 (18)
C100.37568 (13)0.81094 (10)0.29687 (8)0.02757 (18)
C110.22454 (18)0.84649 (16)0.40233 (11)0.0460 (3)
H11A0.18940.76040.45840.055*
H11B0.27610.88300.44390.055*
C120.04846 (19)0.95844 (17)0.35680 (13)0.0513 (3)
H12A−0.04610.98060.42470.062*
C130.1044 (2)1.09463 (16)0.26935 (19)0.0642 (4)
H13A0.15661.13260.30940.077*
H13B−0.00651.16630.24110.077*
C140.2523 (2)1.05937 (13)0.16312 (15)0.0553 (4)
H14A0.28731.14650.10640.066*
C150.1686 (2)0.99973 (17)0.10091 (13)0.0546 (3)
H15A0.05851.07050.07090.065*
H15B0.26140.97730.03360.065*
C160.11210 (18)0.86562 (14)0.18917 (12)0.0436 (3)
H16A0.05810.82790.14880.052*
C170.28778 (16)0.75284 (12)0.23410 (11)0.0380 (2)
H17A0.38000.72900.16720.046*
H17B0.25240.66670.28970.046*
C180.42886 (18)0.94874 (12)0.20848 (12)0.0428 (3)
H18A0.48180.98700.24790.051*
H18B0.52390.92770.14150.051*
C19−0.03504 (18)0.90065 (16)0.29388 (14)0.0499 (3)
H19A−0.14640.97120.26540.060*
H19B−0.07280.81530.34930.060*
H1N20.798 (3)0.5628 (19)0.5188 (16)0.056 (5)*
U11U22U33U12U13U23
S10.03414 (15)0.04240 (16)0.04517 (17)0.00090 (11)−0.01292 (11)−0.02211 (12)
N10.0301 (4)0.0295 (4)0.0249 (3)−0.0049 (3)−0.0058 (3)−0.0114 (3)
N20.0363 (4)0.0423 (5)0.0276 (4)−0.0032 (4)−0.0107 (3)−0.0118 (3)
N30.0351 (4)0.0435 (5)0.0264 (4)−0.0027 (4)−0.0068 (3)−0.0140 (3)
C10.0341 (5)0.0463 (6)0.0330 (5)−0.0067 (4)−0.0059 (4)−0.0208 (4)
C20.0439 (6)0.0582 (7)0.0537 (7)−0.0057 (5)−0.0127 (5)−0.0368 (6)
C30.0468 (7)0.0482 (7)0.0780 (9)−0.0082 (5)−0.0187 (6)−0.0355 (7)
C40.0485 (7)0.0399 (6)0.0619 (8)−0.0167 (5)−0.0066 (6)−0.0158 (5)
C50.0414 (6)0.0381 (5)0.0367 (5)−0.0109 (4)−0.0020 (4)−0.0144 (4)
C60.0261 (4)0.0323 (4)0.0295 (4)−0.0029 (3)−0.0052 (3)−0.0149 (3)
C70.0348 (5)0.0337 (5)0.0238 (4)−0.0092 (4)−0.0022 (3)−0.0122 (3)
C80.0327 (4)0.0295 (4)0.0302 (4)−0.0067 (3)−0.0087 (3)−0.0103 (3)
C90.0301 (4)0.0295 (4)0.0242 (4)−0.0063 (3)−0.0044 (3)−0.0101 (3)
C100.0292 (4)0.0276 (4)0.0256 (4)−0.0053 (3)−0.0050 (3)−0.0101 (3)
C110.0372 (5)0.0618 (7)0.0336 (5)0.0026 (5)−0.0053 (4)−0.0240 (5)
C120.0377 (6)0.0647 (8)0.0516 (7)0.0076 (5)−0.0096 (5)−0.0357 (6)
C130.0572 (8)0.0428 (7)0.1067 (13)0.0107 (6)−0.0372 (9)−0.0429 (8)
C140.0536 (7)0.0294 (5)0.0729 (9)−0.0095 (5)−0.0244 (7)0.0022 (5)
C150.0523 (7)0.0577 (8)0.0418 (6)−0.0021 (6)−0.0200 (6)−0.0058 (6)
C160.0399 (6)0.0473 (6)0.0527 (7)−0.0034 (5)−0.0192 (5)−0.0243 (5)
C170.0377 (5)0.0351 (5)0.0480 (6)−0.0052 (4)−0.0136 (4)−0.0199 (4)
C180.0402 (6)0.0310 (5)0.0536 (7)−0.0126 (4)−0.0123 (5)−0.0043 (4)
C190.0324 (5)0.0551 (7)0.0610 (8)−0.0069 (5)−0.0090 (5)−0.0207 (6)
S1—C81.6784 (10)C10—C171.5415 (14)
N1—C81.3735 (12)C11—C121.5368 (18)
N1—C91.3915 (12)C11—H11A0.9700
N1—C71.4586 (12)C11—H11B0.9700
N2—C81.3351 (13)C12—C191.517 (2)
N2—N31.3732 (13)C12—C131.532 (3)
N2—H1N20.846 (19)C12—H12A0.9800
N3—C91.3065 (12)C13—C141.535 (3)
C1—C21.3876 (16)C13—H13A0.9700
C1—C61.3946 (13)C13—H13B0.9700
C1—H1A0.9300C14—C151.525 (2)
C2—C31.378 (2)C14—C181.5344 (18)
C2—H2A0.9300C14—H14A0.9800
C3—C41.379 (2)C15—C161.520 (2)
C3—H3A0.9300C15—H15A0.9700
C4—C51.3929 (17)C15—H15B0.9700
C4—H4A0.9300C16—C191.5185 (19)
C5—C61.3840 (15)C16—C171.5351 (16)
C5—H5A0.9300C16—H16A0.9800
C6—C71.5131 (13)C17—H17A0.9700
C7—H7A0.9700C17—H17B0.9700
C7—H7B0.9700C18—H18A0.9700
C9—C101.5086 (13)C18—H18B0.9700
C10—C111.5396 (14)C19—H19A0.9700
C10—C181.5396 (14)C19—H19B0.9700
C8—N1—C9108.06 (8)C19—C12—C13109.53 (12)
C8—N1—C7121.22 (8)C19—C12—C11109.84 (11)
C9—N1—C7130.71 (8)C13—C12—C11109.41 (12)
C8—N2—N3113.41 (9)C19—C12—H12A109.3
C8—N2—H1N2126.3 (12)C13—C12—H12A109.3
N3—N2—H1N2119.1 (12)C11—C12—H12A109.3
C9—N3—N2104.79 (8)C12—C13—C14109.13 (10)
C2—C1—C6120.22 (11)C12—C13—H13A109.9
C2—C1—H1A119.9C14—C13—H13A109.9
C6—C1—H1A119.9C12—C13—H13B109.9
C3—C2—C1120.15 (11)C14—C13—H13B109.9
C3—C2—H2A119.9H13A—C13—H13B108.3
C1—C2—H2A119.9C15—C14—C18109.88 (12)
C2—C3—C4119.91 (11)C15—C14—C13109.38 (12)
C2—C3—H3A120.0C18—C14—C13109.37 (13)
C4—C3—H3A120.0C15—C14—H14A109.4
C3—C4—C5120.43 (12)C18—C14—H14A109.4
C3—C4—H4A119.8C13—C14—H14A109.4
C5—C4—H4A119.8C16—C15—C14109.44 (11)
C6—C5—C4119.92 (11)C16—C15—H15A109.8
C6—C5—H5A120.0C14—C15—H15A109.8
C4—C5—H5A120.0C16—C15—H15B109.8
C5—C6—C1119.36 (10)C14—C15—H15B109.8
C5—C6—C7123.23 (9)H15A—C15—H15B108.2
C1—C6—C7117.40 (9)C19—C16—C15109.94 (11)
N1—C7—C6114.42 (8)C19—C16—C17109.96 (11)
N1—C7—H7A108.7C15—C16—C17109.53 (10)
C6—C7—H7A108.7C19—C16—H16A109.1
N1—C7—H7B108.7C15—C16—H16A109.1
C6—C7—H7B108.7C17—C16—H16A109.1
H7A—C7—H7B107.6C16—C17—C10109.85 (9)
N2—C8—N1103.79 (9)C16—C17—H17A109.7
N2—C8—S1129.01 (8)C10—C17—H17A109.7
N1—C8—S1127.19 (8)C16—C17—H17B109.7
N3—C9—N1109.93 (9)C10—C17—H17B109.7
N3—C9—C10122.14 (9)H17A—C17—H17B108.2
N1—C9—C10127.80 (8)C14—C18—C10109.81 (9)
C9—C10—C11108.87 (8)C14—C18—H18A109.7
C9—C10—C18109.22 (8)C10—C18—H18A109.7
C11—C10—C18108.93 (10)C14—C18—H18B109.7
C9—C10—C17112.77 (8)C10—C18—H18B109.7
C11—C10—C17107.69 (9)H18A—C18—H18B108.2
C18—C10—C17109.28 (9)C12—C19—C16109.24 (10)
C12—C11—C10110.21 (10)C12—C19—H19A109.8
C12—C11—H11A109.6C16—C19—H19A109.8
C10—C11—H11A109.6C12—C19—H19B109.8
C12—C11—H11B109.6C16—C19—H19B109.8
C10—C11—H11B109.6H19A—C19—H19B108.3
H11A—C11—H11B108.1
C8—N2—N3—C91.25 (13)N3—C9—C10—C17−132.65 (10)
C6—C1—C2—C30.06 (19)N1—C9—C10—C1751.96 (13)
C1—C2—C3—C40.0 (2)C9—C10—C11—C12177.91 (10)
C2—C3—C4—C5−0.4 (2)C18—C10—C11—C1258.90 (14)
C3—C4—C5—C60.7 (2)C17—C10—C11—C12−59.52 (13)
C4—C5—C6—C1−0.56 (17)C10—C11—C12—C1960.43 (15)
C4—C5—C6—C7179.01 (11)C10—C11—C12—C13−59.83 (15)
C2—C1—C6—C50.21 (16)C19—C12—C13—C14−60.12 (15)
C2—C1—C6—C7−179.39 (10)C11—C12—C13—C1460.33 (15)
C8—N1—C7—C685.08 (11)C12—C13—C14—C1559.48 (15)
C9—N1—C7—C6−95.63 (12)C12—C13—C14—C18−60.91 (15)
C5—C6—C7—N14.38 (14)C18—C14—C15—C1660.57 (16)
C1—C6—C7—N1−176.04 (9)C13—C14—C15—C16−59.51 (15)
N3—N2—C8—N1−1.21 (12)C14—C15—C16—C1960.18 (14)
N3—N2—C8—S1178.19 (8)C14—C15—C16—C17−60.75 (14)
C9—N1—C8—N20.70 (11)C19—C16—C17—C10−60.82 (13)
C7—N1—C8—N2−179.87 (9)C15—C16—C17—C1060.09 (13)
C9—N1—C8—S1−178.72 (7)C9—C10—C17—C16179.74 (9)
C7—N1—C8—S10.71 (14)C11—C10—C17—C1659.61 (12)
N2—N3—C9—N1−0.74 (11)C18—C10—C17—C16−58.58 (12)
N2—N3—C9—C10−176.86 (9)C15—C14—C18—C10−59.41 (15)
C8—N1—C9—N30.04 (11)C13—C14—C18—C1060.67 (14)
C7—N1—C9—N3−179.32 (10)C9—C10—C18—C14−178.04 (10)
C8—N1—C9—C10175.88 (9)C11—C10—C18—C14−59.25 (14)
C7—N1—C9—C10−3.48 (16)C17—C10—C18—C1458.16 (13)
N3—C9—C10—C11−13.20 (14)C13—C12—C19—C1660.51 (14)
N1—C9—C10—C11171.41 (10)C11—C12—C19—C16−59.68 (15)
N3—C9—C10—C18105.64 (11)C15—C16—C19—C12−60.60 (14)
N1—C9—C10—C18−69.75 (12)C17—C16—C19—C1260.06 (14)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···S1i0.85 (2)2.44 (2)3.2753 (11)169.1 (18)
C19—H19B···Cg1ii0.972.853.7885 (17)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1–N3/C8/C9 triazole ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯S1i 0.85 (2)2.44 (2)3.2753 (11)169.1 (18)
C19—H19BCg1ii 0.972.853.7885 (17)141

Symmetry codes: (i) ; (ii) .

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9.  3-(Adamantan-1-yl)-4-[(E)-(2,6-di-fluoro-benzyl-idene)amino]-1-[(4-ethyl-piperazin-1-yl)meth-yl]-4,5-di-hydro-1H-1,2,4-triazole-5-thione.

Authors:  Abdul-Malek S Al-Tamimi; Ebtehal S Al-Abdullah; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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  2 in total

1.  Crystal structure of 3-(adamantan-1-yl)-4-(4-chloro-phen-yl)-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Reem I Al-Wabli; Ali A El-Emam; Obaid S Alroqi; C S Chidan Kumar; Hoong-Kun Fun
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-17

2.  Crystal structure of 2-(adamantan-1-yl)-5-(4-bromo-phen-yl)-1,3,4-oxa-diazole.

Authors:  Nourah Z Alzoman; Ali A El-Emam; Hazem A Ghabbour; C S Chidan Kumar; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-05
  2 in total

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