Literature DB >> 25878859

Crystal structure of 3-(adamantan-1-yl)-4-(4-chloro-phen-yl)-1H-1,2,4-triazole-5(4H)-thione.

Reem I Al-Wabli1, Ali A El-Emam2, Obaid S Alroqi1, C S Chidan Kumar3, Hoong-Kun Fun4.   

Abstract

The title compound, C18H20ClN3S, is a functionalized triazoline-3-thione derivative. The benzene ring is almost perpendic-ular to the planar 1,2,4-triazole ring [maximum deviation = 0.007 (1) Å] with a dihedral angle of 89.61 (5)° between them and there is an adamantane substituent at the 3-position of the triazole-thione ring. In the crystal, N-H⋯S hydrogen-bonding inter-actions link the mol-ecules into chains extending along the c-axis direction. The crystal packing is further stabilized by weak C-H⋯π inter-actions that link adjacent chains into a two-dimensional structure in the bc plane. The crystal studied was an inversion twin with a 0.50 (3):0.50 (3) domain ratio.

Entities:  

Keywords:  1,2,4-triazole; adamantane; crystal structure; hydrogen bonding; starting material

Year:  2015        PMID: 25878859      PMCID: PMC4384613          DOI: 10.1107/S2056989015000596

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of adamantane derivatives, see: Lorenzo et al. (2008 ▸); Wang et al. (2013 ▸); Kadi et al. (2010 ▸); Balzarini et al. (2009 ▸); Protopopova et al. (2005 ▸); Vernier et al. (1969 ▸). For the biological activity of adamantyl-1,2,4-triazole derivatives, see: El-Emam & Ibrahim (1991 ▸); Al-Abdullah et al. (2014 ▸); El-Emam et al. (2004 ▸, 2013 ▸). For related adamantyl-1,2,4-triazole structures, see: El-Emam et al. (2012 ▸), Al-Tamimi et al. (2013 ▸), Al-Omary et al. (2014 ▸); Almutairi et al. (2012 ▸). For the synthesis of the title compound, see: Al-Deeb et al. (2006 ▸).

Experimental

Crystal data

C18H20ClN3S M = 345.88 Tetragonal, a = 23.1302 (5) Å c = 6.4100 (2) Å V = 3429.39 (18) Å3 Z = 8 Mo Kα radiation μ = 0.35 mm−1 T = 150 K 0.68 × 0.29 × 0.26 mm

Data collection

Bruker APEXII CCD diffractometer 106262 measured reflections 11408 independent reflections 10584 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.082 S = 1.06 11408 reflections 213 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack (1983 ▸), 5353 Friedel pairs Absolute structure parameter: 0.50 (3)

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015000596/sj5439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015000596/sj5439Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015000596/sj5439Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015000596/sj5439fig1.tif The mol­ecular structure of the title compound with atom labels and 50% probability displacement ellipsoids. Click here for additional data file. c . DOI: 10.1107/S2056989015000596/sj5439fig2.tif Crystal packing of the title compound, showing the N–H⋯S hydrogen bonding inter­actions (Table 1) as dashed lines linking the mol­ecules into chains extending along the c axis direction. Other H-atoms are omited for clarity. CCDC reference: 1042916 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H20ClN3SDx = 1.340 Mg m3
Mr = 345.88Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I4Cell parameters from 9155 reflections
a = 23.1302 (5) Åθ = 2.5–40.8°
c = 6.4100 (2) ŵ = 0.35 mm1
V = 3429.39 (18) Å3T = 150 K
Z = 8Needle, colourless
F(000) = 14560.68 × 0.29 × 0.26 mm
Bruker APEXII CCD diffractometerRint = 0.033
φ and ω scansθmax = 41.2°, θmin = 2.5°
106262 measured reflectionsh = −42→42
11408 independent reflectionsk = −42→42
10584 reflections with I > 2σ(I)l = −11→11
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0483P)2 + 0.551P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.082(Δ/σ)max = 0.002
S = 1.06Δρmax = 0.53 e Å3
11408 reflectionsΔρmin = −0.31 e Å3
213 parametersAbsolute structure: Flack (1983), 5353 Friedel pairs
0 restraintsAbsolute structure parameter: 0.50 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/Ueq
S10.25120 (2)0.81338 (2)0.20570 (4)0.01558 (4)
Cl10.10286 (2)0.98207 (2)0.89359 (5)0.03118 (7)
N10.15119 (3)0.77326 (3)0.38819 (12)0.01309 (10)
N20.13872 (4)0.68822 (4)0.23712 (14)0.01734 (13)
N30.18691 (3)0.71564 (4)0.16208 (13)0.01642 (12)
C10.16658 (4)0.83033 (4)0.70574 (15)0.01686 (13)
H1A0.19010.80120.75880.020*
C20.15555 (5)0.87980 (4)0.82355 (16)0.01990 (15)
H2A0.17150.88400.95580.024*
C30.12041 (5)0.92258 (4)0.74046 (17)0.01972 (15)
C40.09818 (5)0.91871 (4)0.53962 (19)0.02225 (17)
H4A0.07610.94860.48430.027*
C50.10952 (4)0.86925 (4)0.42249 (16)0.01916 (15)
H5A0.09530.86600.28740.023*
C60.14220 (4)0.82486 (4)0.50837 (14)0.01374 (12)
C70.19637 (3)0.76715 (4)0.25068 (13)0.01323 (12)
C80.11738 (4)0.72353 (4)0.37613 (14)0.01404 (12)
C90.06417 (3)0.70942 (4)0.50180 (14)0.01456 (12)
C100.04492 (5)0.64750 (5)0.4465 (2)0.02441 (19)
H10A0.03680.64500.29830.029*
H10B0.07580.62060.47840.029*
C11−0.00943 (6)0.63104 (5)0.5707 (2)0.0292 (2)
H11A−0.02140.59180.53300.035*
C12−0.05832 (5)0.67338 (6)0.5199 (2)0.0292 (2)
H12A−0.06730.67160.37220.035*
H12B−0.09280.66280.59710.035*
C13−0.03997 (4)0.73459 (6)0.5782 (2)0.02497 (19)
H13A−0.07150.76150.54650.030*
C14−0.02609 (5)0.73732 (7)0.8112 (2)0.0307 (2)
H14A−0.01450.77630.84870.037*
H14B−0.06020.72740.89160.037*
C150.02267 (5)0.69501 (7)0.86116 (18)0.0303 (3)
H15A0.03130.69671.01070.036*
C160.07706 (4)0.71160 (6)0.73728 (16)0.0253 (2)
H16A0.10820.68500.77030.030*
H16B0.08930.75030.77590.030*
C170.00415 (6)0.63344 (7)0.8040 (3)0.0356 (3)
H17A0.03490.60650.83690.043*
H17B−0.02980.62260.88380.043*
C180.01416 (4)0.75172 (5)0.45273 (18)0.02095 (16)
H18A0.02560.79080.48880.025*
H18B0.00550.75070.30470.025*
H1N30.2084 (9)0.6995 (9)0.057 (4)0.029 (5)*
U11U22U33U12U13U23
S10.01413 (8)0.01610 (8)0.01653 (8)−0.00195 (6)0.00022 (6)0.00131 (6)
Cl10.04393 (16)0.01649 (9)0.03312 (14)0.00301 (9)0.01278 (12)−0.00681 (9)
N10.0119 (2)0.0135 (2)0.0139 (3)0.00076 (19)0.0009 (2)−0.0017 (2)
N20.0145 (3)0.0176 (3)0.0200 (3)−0.0026 (2)0.0042 (2)−0.0047 (2)
N30.0140 (3)0.0175 (3)0.0178 (3)−0.0019 (2)0.0040 (2)−0.0052 (2)
C10.0189 (3)0.0158 (3)0.0158 (3)0.0034 (2)−0.0032 (3)−0.0026 (3)
C20.0251 (4)0.0178 (3)0.0168 (4)0.0013 (3)−0.0005 (3)−0.0038 (3)
C30.0226 (4)0.0136 (3)0.0230 (4)0.0011 (3)0.0052 (3)−0.0030 (3)
C40.0248 (4)0.0151 (3)0.0269 (5)0.0065 (3)−0.0008 (3)0.0000 (3)
C50.0211 (4)0.0170 (3)0.0193 (4)0.0048 (3)−0.0030 (3)0.0002 (3)
C60.0133 (3)0.0127 (3)0.0152 (3)0.0021 (2)0.0000 (2)−0.0015 (2)
C70.0117 (3)0.0146 (3)0.0134 (3)0.0007 (2)0.0000 (2)−0.0005 (2)
C80.0120 (3)0.0152 (3)0.0149 (3)0.0001 (2)0.0010 (2)−0.0016 (2)
C90.0113 (3)0.0177 (3)0.0146 (3)−0.0002 (2)0.0011 (2)0.0002 (3)
C100.0227 (4)0.0184 (4)0.0322 (5)−0.0046 (3)0.0090 (4)−0.0016 (3)
C110.0251 (5)0.0242 (4)0.0382 (6)−0.0082 (4)0.0103 (4)0.0016 (4)
C120.0150 (4)0.0438 (6)0.0288 (5)−0.0089 (4)−0.0016 (3)0.0016 (5)
C130.0125 (3)0.0319 (5)0.0305 (5)0.0038 (3)0.0031 (3)0.0058 (4)
C140.0208 (4)0.0435 (7)0.0280 (5)−0.0009 (4)0.0101 (4)−0.0069 (5)
C150.0181 (4)0.0568 (8)0.0161 (4)−0.0046 (4)0.0023 (3)0.0064 (4)
C160.0140 (3)0.0462 (6)0.0157 (4)−0.0035 (4)−0.0010 (3)0.0036 (4)
C170.0241 (5)0.0438 (7)0.0388 (7)0.0009 (5)0.0085 (5)0.0235 (6)
C180.0134 (3)0.0238 (4)0.0256 (4)0.0034 (3)0.0018 (3)0.0055 (3)
S1—C71.6836 (9)C10—H10A0.9700
Cl1—C31.7384 (10)C10—H10B0.9700
N1—C71.3744 (11)C11—C171.529 (2)
N1—C81.3931 (11)C11—C121.531 (2)
N1—C61.4355 (11)C11—H11A0.9800
N2—C81.3056 (12)C12—C131.5246 (19)
N2—N31.3696 (11)C12—H12A0.9700
N3—C71.3379 (12)C12—H12B0.9700
N3—H1N30.92 (2)C13—C141.529 (2)
C1—C61.3909 (13)C13—C181.5399 (15)
C1—C21.3946 (13)C13—H13A0.9800
C1—H1A0.9300C14—C151.527 (2)
C2—C31.3869 (14)C14—H14A0.9700
C2—H2A0.9300C14—H14B0.9700
C3—C41.3892 (16)C15—C171.532 (2)
C4—C51.3933 (14)C15—C161.5362 (15)
C4—H4A0.9300C15—H15A0.9800
C5—C61.3889 (12)C16—H16A0.9700
C5—H5A0.9300C16—H16B0.9700
C8—C91.5067 (12)C17—H17A0.9700
C9—C161.5394 (14)C17—H17B0.9700
C9—C101.5413 (14)C18—H18A0.9700
C9—C181.5473 (13)C18—H18B0.9700
C10—C111.5359 (15)
C7—N1—C8107.83 (7)C17—C11—H11A109.4
C7—N1—C6122.67 (7)C12—C11—H11A109.4
C8—N1—C6129.42 (7)C10—C11—H11A109.4
C8—N2—N3104.93 (7)C13—C12—C11109.64 (9)
C7—N3—N2113.35 (7)C13—C12—H12A109.7
C7—N3—H1N3125.9 (14)C11—C12—H12A109.7
N2—N3—H1N3120.7 (14)C13—C12—H12B109.7
C6—C1—C2119.54 (8)C11—C12—H12B109.7
C6—C1—H1A120.2H12A—C12—H12B108.2
C2—C1—H1A120.2C12—C13—C14109.65 (11)
C3—C2—C1118.99 (9)C12—C13—C18109.72 (10)
C3—C2—H2A120.5C14—C13—C18109.20 (9)
C1—C2—H2A120.5C12—C13—H13A109.4
C2—C3—C4121.80 (9)C14—C13—H13A109.4
C2—C3—Cl1119.00 (8)C18—C13—H13A109.4
C4—C3—Cl1119.20 (8)C15—C14—C13109.46 (10)
C3—C4—C5118.85 (9)C15—C14—H14A109.8
C3—C4—H4A120.6C13—C14—H14A109.8
C5—C4—H4A120.6C15—C14—H14B109.8
C6—C5—C4119.73 (9)C13—C14—H14B109.8
C6—C5—H5A120.1H14A—C14—H14B108.2
C4—C5—H5A120.1C14—C15—C17109.82 (10)
C5—C6—C1120.93 (8)C14—C15—C16109.66 (11)
C5—C6—N1118.74 (8)C17—C15—C16109.74 (11)
C1—C6—N1120.33 (7)C14—C15—H15A109.2
N3—C7—N1103.86 (7)C17—C15—H15A109.2
N3—C7—S1128.03 (7)C16—C15—H15A109.2
N1—C7—S1128.11 (7)C15—C16—C9109.88 (8)
N2—C8—N1110.01 (8)C15—C16—H16A109.7
N2—C8—C9122.57 (8)C9—C16—H16A109.7
N1—C8—C9127.42 (8)C15—C16—H16B109.7
C8—C9—C16111.04 (7)C9—C16—H16B109.7
C8—C9—C10108.32 (7)H16A—C16—H16B108.2
C16—C9—C10108.17 (9)C11—C17—C15108.97 (10)
C8—C9—C18111.41 (8)C11—C17—H17A109.9
C16—C9—C18108.87 (8)C15—C17—H17A109.9
C10—C9—C18108.96 (8)C11—C17—H17B109.9
C11—C10—C9110.34 (9)C15—C17—H17B109.9
C11—C10—H10A109.6H17A—C17—H17B108.3
C9—C10—H10A109.6C13—C18—C9109.81 (8)
C11—C10—H10B109.6C13—C18—H18A109.7
C9—C10—H10B109.6C9—C18—H18A109.7
H10A—C10—H10B108.1C13—C18—H18B109.7
C17—C11—C12109.66 (11)C9—C18—H18B109.7
C17—C11—C10109.25 (11)H18A—C18—H18B108.2
C12—C11—C10109.63 (10)
C8—N2—N3—C70.12 (11)N1—C8—C9—C10−175.22 (9)
C6—C1—C2—C3−0.08 (15)N2—C8—C9—C18−115.92 (10)
C1—C2—C3—C4−3.09 (16)N1—C8—C9—C1864.95 (12)
C1—C2—C3—Cl1175.90 (8)C8—C9—C10—C11−179.89 (10)
C2—C3—C4—C52.89 (17)C16—C9—C10—C1159.67 (12)
Cl1—C3—C4—C5−176.10 (9)C18—C9—C10—C11−58.54 (13)
C3—C4—C5—C60.48 (16)C9—C10—C11—C17−60.75 (14)
C4—C5—C6—C1−3.62 (15)C9—C10—C11—C1259.44 (14)
C4—C5—C6—N1177.30 (9)C17—C11—C12—C1359.98 (13)
C2—C1—C6—C53.41 (14)C10—C11—C12—C13−59.96 (14)
C2—C1—C6—N1−177.52 (9)C11—C12—C13—C14−59.57 (12)
C7—N1—C6—C588.15 (11)C11—C12—C13—C1860.37 (13)
C8—N1—C6—C5−88.12 (12)C12—C13—C14—C1559.55 (12)
C7—N1—C6—C1−90.93 (11)C18—C13—C14—C15−60.70 (14)
C8—N1—C6—C192.80 (11)C13—C14—C15—C17−59.99 (13)
N2—N3—C7—N1−0.81 (10)C13—C14—C15—C1660.67 (14)
N2—N3—C7—S1178.68 (7)C14—C15—C16—C9−60.06 (15)
C8—N1—C7—N31.15 (9)C17—C15—C16—C960.65 (14)
C6—N1—C7—N3−175.82 (8)C8—C9—C16—C15−178.05 (10)
C8—N1—C7—S1−178.34 (7)C10—C9—C16—C15−59.33 (13)
C6—N1—C7—S14.69 (12)C18—C9—C16—C1558.94 (13)
N3—N2—C8—N10.64 (10)C12—C11—C17—C15−59.90 (12)
N3—N2—C8—C9−178.62 (8)C10—C11—C17—C1560.27 (13)
C7—N1—C8—N2−1.17 (10)C14—C15—C17—C1160.10 (13)
C6—N1—C8—N2175.53 (9)C16—C15—C17—C11−60.52 (13)
C7—N1—C8—C9178.05 (8)C12—C13—C18—C9−59.95 (12)
C6—N1—C8—C9−5.25 (15)C14—C13—C18—C960.26 (13)
N2—C8—C9—C16122.54 (11)C8—C9—C18—C13178.01 (9)
N1—C8—C9—C16−56.58 (13)C16—C9—C18—C13−59.20 (12)
N2—C8—C9—C103.91 (13)C10—C9—C18—C1358.56 (12)
D—H···AD—HH···AD···AD—H···A
N3—H1N3···S1i0.92 (2)2.46 (2)3.3253 (9)158.4 (19)
C13—H13A···Cg2ii0.982.973.8881 (13)156
Table 1

Hydrogen-bond geometry (, )

Cg2 is the centroid of the C1C6 phenyl ring.

DHA DHHA D A DHA
N3H1N3S1i 0.92(2)2.46(2)3.3253(9)158.4(19)
C13H13A Cg2ii 0.982.973.8881(13)156

Symmetry codes: (i) ; (ii) .

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