Literature DB >> 25553016

Crystal structure of 2-(adamantan-1-yl)-5-(4-bromo-phen-yl)-1,3,4-oxa-diazole.

Nourah Z Alzoman1, Ali A El-Emam2, Hazem A Ghabbour1, C S Chidan Kumar3, Hoong-Kun Fun4.   

Abstract

In the title mol-ecule, C18H19BrN2O, the benzene ring is inclined to the oxa-diazole ring by 10.44 (8)°. In the crystal, C-H⋯π inter-actions link the mol-ecules in a head-to-tail fashion, forming chains extending along the c-axis direction. The chains are further connected by π-π stacking inter-actions, with centroid-centroid distances of 3.6385 (7) Å, forming layers parallel to the bc plane.

Entities:  

Keywords:  1,3,4-oxa­diazole; C—H⋯π hydrogen bonds; adamntane derivative; crystal structure; π–π inter­actions

Year:  2014        PMID: 25553016      PMCID: PMC4257436          DOI: 10.1107/S1600536814023861

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of adamantane derivatives, see: Al-Abdullah et al. (2014 ▶); Vernier et al. (1969 ▶); El-Emam et al. (2013 ▶); Kadi et al. (2010 ▶); Balzarini et al. (2009 ▶). For the biological activity of adamantyl-1,3,4- oxa­diazole derivatives, see: Al-Deeb et al. (2006 ▶); El-Emam et al. (2004 ▶); Kadi et al. (2007 ▶). For related adamantyl 1,3,4-oxa­diazole structures, see: El-Emam et al. (2012 ▶); Al-Omary et al. (2014 ▶). For related 2,5-disubstituted 1,3,4-oxa­diazole structures, see: Cordes et al. (2011 ▶); Franco et al. (2003 ▶). For the synthesis of the title compound, see: Kadi et al. (2007 ▶).

Experimental

Crystal data

C18H19BrN2O M = 359.26 Monoclinic, a = 13.2571 (5) Å b = 6.4753 (3) Å c = 19.6761 (7) Å β = 114.924 (2)° V = 1531.76 (11) Å3 Z = 4 Mo Kα radiation μ = 2.69 mm−1 T = 293 K 0.28 × 0.22 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.520, T max = 0.779 39946 measured reflections 4678 independent reflections 3996 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.069 S = 1.06 4678 reflections 199 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.50 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814023861/rz5137sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814023861/rz5137Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814023861/rz5137Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814023861/rz5137fig1.tif The mol­ecular structure of the title compound with 50% probability displacement ellipsoids. Click here for additional data file. . DOI: 10.1107/S1600536814023861/rz5137fig2.tif Crystal packing of the title compound, showing the C–H⋯π inter­actions as dashed lines. Other H-atoms are omitted for clarity. CCDC reference: 1031604 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H19BrN2OF(000) = 736
Mr = 359.26Dx = 1.558 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9861 reflections
a = 13.2571 (5) Åθ = 2.3–30.5°
b = 6.4753 (3) ŵ = 2.69 mm1
c = 19.6761 (7) ÅT = 293 K
β = 114.924 (2)°Block, colourless
V = 1531.76 (11) Å30.28 × 0.22 × 0.10 mm
Z = 4
Bruker APEXII CCD diffractometer4678 independent reflections
Radiation source: fine-focus sealed tube3996 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 30.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.520, Tmax = 0.779k = −9→9
39946 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0261P)2 + 1.1502P] where P = (Fo2 + 2Fc2)/3
4678 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.032308 (13)−0.26186 (3)0.704343 (9)0.02674 (6)
O10.23225 (9)0.17552 (15)0.46715 (6)0.0156 (2)
N10.16178 (12)0.4626 (2)0.48948 (8)0.0232 (3)
N20.21377 (12)0.5092 (2)0.44146 (8)0.0220 (3)
C10.06684 (12)0.2219 (2)0.57759 (8)0.0182 (3)
H1A0.04030.35600.56520.022*
C20.03445 (12)0.1033 (3)0.62379 (8)0.0204 (3)
H2A−0.01390.15680.64250.025*
C30.07532 (12)−0.0960 (2)0.64159 (8)0.0184 (3)
C40.14611 (13)−0.1809 (2)0.61362 (8)0.0190 (3)
H4A0.1722−0.31530.62600.023*
C50.17744 (12)−0.0626 (2)0.56699 (8)0.0184 (3)
H5A0.2240−0.11840.54720.022*
C60.13929 (12)0.1400 (2)0.54964 (8)0.0150 (3)
C70.17477 (12)0.2668 (2)0.50242 (8)0.0155 (3)
C80.25323 (12)0.3371 (2)0.43018 (8)0.0149 (3)
C90.32131 (11)0.2945 (2)0.38782 (7)0.0129 (2)
C100.43936 (12)0.2361 (2)0.44483 (8)0.0163 (3)
H10A0.47020.34730.48070.020*
H10B0.43610.11320.47200.020*
C110.51455 (12)0.1961 (2)0.40472 (9)0.0192 (3)
H11A0.58960.16130.44170.023*
C120.51921 (13)0.3889 (2)0.36103 (9)0.0220 (3)
H12A0.56680.36340.33560.026*
H12B0.55010.50360.39530.026*
C130.40153 (13)0.4430 (2)0.30350 (9)0.0202 (3)
H13A0.40460.56590.27530.024*
C140.32711 (13)0.4874 (2)0.34404 (8)0.0182 (3)
H14A0.25300.52450.30780.022*
H14B0.35720.60250.37830.022*
C150.27356 (12)0.1114 (2)0.33328 (8)0.0181 (3)
H15A0.2698−0.01050.36080.022*
H15B0.19890.14390.29680.022*
C160.34879 (13)0.0691 (2)0.29311 (9)0.0210 (3)
H16A0.3185−0.04680.25830.025*
C170.46678 (13)0.0156 (2)0.35028 (9)0.0217 (3)
H17A0.4650−0.10760.37780.026*
H17B0.5137−0.01170.32450.026*
C180.35327 (14)0.2619 (3)0.24913 (9)0.0240 (3)
H18A0.39940.23500.22280.029*
H18B0.27900.29620.21240.029*
U11U22U33U12U13U23
Br10.02327 (9)0.03737 (10)0.02322 (8)−0.00111 (7)0.01336 (6)0.00809 (7)
O10.0214 (5)0.0128 (4)0.0179 (5)0.0028 (4)0.0133 (4)0.0014 (4)
N10.0332 (7)0.0170 (6)0.0291 (7)0.0049 (5)0.0227 (6)0.0016 (5)
N20.0305 (7)0.0158 (6)0.0276 (7)0.0048 (5)0.0201 (6)0.0023 (5)
C10.0185 (6)0.0197 (7)0.0187 (6)0.0043 (5)0.0101 (5)0.0008 (5)
C20.0185 (7)0.0274 (8)0.0183 (7)0.0044 (6)0.0107 (6)−0.0005 (6)
C30.0167 (6)0.0261 (7)0.0136 (6)−0.0029 (6)0.0076 (5)0.0011 (5)
C40.0206 (7)0.0174 (6)0.0202 (7)0.0021 (6)0.0096 (6)0.0013 (5)
C50.0196 (7)0.0186 (7)0.0205 (7)0.0028 (5)0.0118 (6)−0.0005 (5)
C60.0157 (6)0.0166 (6)0.0135 (6)0.0013 (5)0.0068 (5)−0.0013 (5)
C70.0164 (6)0.0160 (6)0.0163 (6)0.0025 (5)0.0089 (5)−0.0018 (5)
C80.0168 (6)0.0129 (6)0.0150 (6)0.0003 (5)0.0067 (5)0.0010 (5)
C90.0147 (6)0.0108 (6)0.0139 (6)0.0006 (5)0.0068 (5)0.0005 (4)
C100.0164 (6)0.0165 (6)0.0152 (6)0.0014 (5)0.0060 (5)0.0021 (5)
C110.0147 (6)0.0208 (7)0.0223 (7)0.0026 (5)0.0081 (6)0.0046 (6)
C120.0221 (7)0.0193 (7)0.0296 (8)−0.0039 (6)0.0158 (6)0.0005 (6)
C130.0269 (8)0.0165 (6)0.0226 (7)0.0027 (6)0.0156 (6)0.0064 (5)
C140.0224 (7)0.0137 (6)0.0212 (7)0.0042 (5)0.0117 (6)0.0050 (5)
C150.0176 (7)0.0185 (7)0.0193 (7)−0.0047 (5)0.0089 (6)−0.0057 (5)
C160.0270 (8)0.0188 (7)0.0224 (7)−0.0040 (6)0.0153 (6)−0.0074 (6)
C170.0279 (8)0.0150 (6)0.0314 (8)0.0052 (6)0.0214 (7)0.0029 (6)
C180.0278 (8)0.0306 (8)0.0173 (7)0.0027 (7)0.0130 (6)0.0013 (6)
Br1—C31.8965 (14)C10—H10B0.9700
O1—C71.3629 (16)C11—C171.530 (2)
O1—C81.3682 (17)C11—C121.532 (2)
N1—C71.2902 (19)C11—H11A0.9800
N1—N21.4169 (18)C12—C131.533 (2)
N2—C81.2891 (18)C12—H12A0.9700
C1—C21.389 (2)C12—H12B0.9700
C1—C61.3968 (19)C13—C181.534 (2)
C1—H1A0.9300C13—C141.535 (2)
C2—C31.386 (2)C13—H13A0.9800
C2—H2A0.9300C14—H14A0.9700
C3—C41.386 (2)C14—H14B0.9700
C4—C51.386 (2)C15—C161.536 (2)
C4—H4A0.9300C15—H15A0.9700
C5—C61.396 (2)C15—H15B0.9700
C5—H5A0.9300C16—C171.533 (2)
C6—C71.4584 (19)C16—C181.534 (2)
C8—C91.4899 (19)C16—H16A0.9800
C9—C141.5376 (19)C17—H17A0.9700
C9—C101.5397 (19)C17—H17B0.9700
C9—C151.5447 (19)C18—H18A0.9700
C10—C111.532 (2)C18—H18B0.9700
C10—H10A0.9700
C7—O1—C8102.80 (11)C12—C11—H11A109.6
C7—N1—N2106.19 (12)C11—C12—C13109.36 (12)
C8—N2—N1106.11 (12)C11—C12—H12A109.8
C2—C1—C6120.09 (14)C13—C12—H12A109.8
C2—C1—H1A120.0C11—C12—H12B109.8
C6—C1—H1A120.0C13—C12—H12B109.8
C3—C2—C1118.96 (13)H12A—C12—H12B108.3
C3—C2—H2A120.5C12—C13—C18109.63 (13)
C1—C2—H2A120.5C12—C13—C14109.63 (12)
C4—C3—C2121.79 (14)C18—C13—C14109.58 (13)
C4—C3—Br1118.26 (12)C12—C13—H13A109.3
C2—C3—Br1119.93 (11)C18—C13—H13A109.3
C3—C4—C5119.04 (14)C14—C13—H13A109.3
C3—C4—H4A120.5C13—C14—C9109.50 (11)
C5—C4—H4A120.5C13—C14—H14A109.8
C4—C5—C6120.16 (13)C9—C14—H14A109.8
C4—C5—H5A119.9C13—C14—H14B109.8
C6—C5—H5A119.9C9—C14—H14B109.8
C5—C6—C1119.93 (13)H14A—C14—H14B108.2
C5—C6—C7120.28 (13)C16—C15—C9109.24 (12)
C1—C6—C7119.80 (13)C16—C15—H15A109.8
N1—C7—O1112.48 (13)C9—C15—H15A109.8
N1—C7—C6128.83 (13)C16—C15—H15B109.8
O1—C7—C6118.67 (12)C9—C15—H15B109.8
N2—C8—O1112.42 (12)H15A—C15—H15B108.3
N2—C8—C9129.92 (13)C17—C16—C18109.12 (13)
O1—C8—C9117.56 (12)C17—C16—C15110.23 (12)
C8—C9—C14110.37 (11)C18—C16—C15109.44 (13)
C8—C9—C10107.90 (11)C17—C16—H16A109.3
C14—C9—C10109.40 (11)C18—C16—H16A109.3
C8—C9—C15111.30 (11)C15—C16—H16A109.3
C14—C9—C15109.70 (12)C11—C17—C16109.56 (12)
C10—C9—C15108.11 (11)C11—C17—H17A109.8
C11—C10—C9110.40 (11)C16—C17—H17A109.8
C11—C10—H10A109.6C11—C17—H17B109.8
C9—C10—H10A109.6C16—C17—H17B109.8
C11—C10—H10B109.6H17A—C17—H17B108.2
C9—C10—H10B109.6C13—C18—C16109.45 (12)
H10A—C10—H10B108.1C13—C18—H18A109.8
C17—C11—C10108.83 (12)C16—C18—H18A109.8
C17—C11—C12109.40 (13)C13—C18—H18B109.8
C10—C11—C12109.87 (12)C16—C18—H18B109.8
C17—C11—H11A109.6H18A—C18—H18B108.2
C10—C11—H11A109.6
C7—N1—N2—C8−0.10 (18)O1—C8—C9—C1552.62 (16)
C6—C1—C2—C30.1 (2)C8—C9—C10—C11−178.46 (11)
C1—C2—C3—C4−1.0 (2)C14—C9—C10—C11−58.36 (15)
C1—C2—C3—Br1−179.84 (11)C15—C9—C10—C1161.06 (15)
C2—C3—C4—C50.4 (2)C9—C10—C11—C17−61.10 (15)
Br1—C3—C4—C5179.30 (11)C9—C10—C11—C1258.67 (16)
C3—C4—C5—C61.0 (2)C17—C11—C12—C1360.01 (16)
C4—C5—C6—C1−1.8 (2)C10—C11—C12—C13−59.40 (16)
C4—C5—C6—C7178.16 (14)C11—C12—C13—C18−59.80 (16)
C2—C1—C6—C51.3 (2)C11—C12—C13—C1460.53 (16)
C2—C1—C6—C7−178.74 (14)C12—C13—C14—C9−60.59 (16)
N2—N1—C7—O10.28 (18)C18—C13—C14—C959.77 (16)
N2—N1—C7—C6178.56 (14)C8—C9—C14—C13177.65 (12)
C8—O1—C7—N1−0.34 (16)C10—C9—C14—C1359.08 (15)
C8—O1—C7—C6−178.81 (12)C15—C9—C14—C13−59.35 (15)
C5—C6—C7—N1−168.91 (16)C8—C9—C15—C16−178.05 (12)
C1—C6—C7—N111.1 (2)C14—C9—C15—C1659.51 (15)
C5—C6—C7—O19.3 (2)C10—C9—C15—C16−59.72 (15)
C1—C6—C7—O1−170.73 (13)C9—C15—C16—C1759.96 (16)
N1—N2—C8—O1−0.12 (17)C9—C15—C16—C18−60.05 (16)
N1—N2—C8—C9−176.25 (14)C10—C11—C17—C1659.51 (15)
C7—O1—C8—N20.27 (16)C12—C11—C17—C16−60.55 (15)
C7—O1—C8—C9176.93 (12)C18—C16—C17—C1160.45 (15)
N2—C8—C9—C14−9.4 (2)C15—C16—C17—C11−59.76 (16)
O1—C8—C9—C14174.68 (12)C12—C13—C18—C1659.93 (16)
N2—C8—C9—C10110.13 (17)C14—C13—C18—C16−60.43 (16)
O1—C8—C9—C10−65.84 (15)C17—C16—C18—C13−60.03 (16)
N2—C8—C9—C15−131.41 (16)C15—C16—C18—C1360.66 (16)
D—H···AD—HH···AD···AD—H···A
C18—H18B···Cg1i0.972.743.6709 (19)162
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C6 ring.

DHA DHHA D A DHA
C18H18B Cg1i 0.972.743.6709(19)162

Symmetry code: (i) .

  11 in total

1.  The toxicologic and pharmacologic properties of amantadine hydrochloride.

Authors:  V G Vernier; J B Harmon; J M Stump; T E Lynes; J P Marvel; D H Smith
Journal:  Toxicol Appl Pharmacol       Date:  1969-11       Impact factor: 4.219

2.  Synthesis, antimicrobial and anti-inflammatory activities of novel 5-(1-adamantyl)-1,3,4-thiadiazole derivatives.

Authors:  Adnan A Kadi; Ebtehal S Al-Abdullah; Ihsan A Shehata; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Eur J Med Chem       Date:  2010-08-12       Impact factor: 6.514

3.  Synthesis, antimicrobial, and anti-HIV-1 activity of certain 5-(1-adamantyl)-2-substituted thio-1,3,4-oxadiazoles and 5-(1-adamantyl)-3-substituted aminomethyl-1,3,4-oxadiazoline-2-thiones.

Authors:  Ali A El-Emam; Omar A Al-Deeb; Mohamed Al-Omar; Jochen Lehmann
Journal:  Bioorg Med Chem       Date:  2004-10-01       Impact factor: 3.641

4.  Synthesis and antimicrobial activity of novel 5-(1-adamantyl)-2-aminomethyl-4-substituted-1,2,4-triazoline-3-thiones.

Authors:  Ali A El-Emam; Abdul-Malek S Al-Tamimi; Mohamed A Al-Omar; Khalid A Alrashood; Elsayed E Habib
Journal:  Eur J Med Chem       Date:  2013-08-08       Impact factor: 6.514

5.  2-Phenyl-5-(p-tol-yl)-1,3,4-oxadiazole.

Authors:  David B Cordes; Guoxiong Hua; Alexandra M Z Slawin; J Derek Woollins
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-22

6.  2-(Adamantan-1-yl)-5-(4-nitro-phen-yl)-1,3,4-oxadiazole.

Authors:  Ali A El-Emam; Adnan A Kadi; Nasser R El-Brollosy; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

8.  Synthesis, antimicrobial, and anti-inflammatory activity, of novel S-substituted and N-substituted 5-(1-adamantyl)-1,2,4-triazole-3-thiols.

Authors:  Ebtehal S Al-Abdullah; Hanadi H Asiri; Siham Lahsasni; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Drug Des Devel Ther       Date:  2014-05-12       Impact factor: 4.162

9.  3-(Adamantan-1-yl)-4-benzyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Fatmah A M Al-Omary; Hazem A Ghabbour; Ali A El-Emam; C S Chidan Kumar; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-14

10.  Synthesis and anti-HIV studies of 2- and 3-adamantyl-substituted thiazolidin-4-ones.

Authors:  Jan Balzarini; Barbara Orzeszko-Krzesińska; Jan K Maurin; Andrzej Orzeszko
Journal:  Eur J Med Chem       Date:  2008-03-10       Impact factor: 6.514

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