Literature DB >> 25139187

Using next-generation sequencing to isolate mutant genes from forward genetic screens.

Korbinian Schneeberger1.   

Abstract

The long-lasting success of forward genetic screens relies on the simple molecular basis of the characterized phenotypes, which are typically caused by mutations in single genes. Mapping the location of causal mutations using genetic crosses has traditionally been a complex, multistep procedure, but next-generation sequencing now allows the rapid identification of causal mutations at single-nucleotide resolution even in complex genetic backgrounds. Recent advances of this mapping-by-sequencing approach include methods that are independent of reference genome sequences, genetic crosses and any kind of linkage information, which make forward genetics amenable for species that have not been considered for forward genetic screens so far.

Mesh:

Year:  2014        PMID: 25139187     DOI: 10.1038/nrg3745

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  116 in total

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Journal:  Nat Rev Genet       Date:  2002-03       Impact factor: 53.242

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Review 3.  Perspectives for identification of mutations in the zebrafish: making use of next-generation sequencing technologies for forward genetic approaches.

Authors:  Katrin Henke; Margot E Bowen; Matthew P Harris
Journal:  Methods       Date:  2013-06-05       Impact factor: 3.608

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Journal:  Plant Physiol       Date:  2005-05-20       Impact factor: 8.340

5.  Calling SNPs without a reference sequence.

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6.  Dissection of genetically complex traits with extremely large pools of yeast segregants.

Authors:  Ian M Ehrenreich; Noorossadat Torabi; Yue Jia; Jonathan Kent; Stephen Martis; Joshua A Shapiro; David Gresham; Amy A Caudy; Leonid Kruglyak
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

7.  The statistics of bulk segregant analysis using next generation sequencing.

Authors:  Paul M Magwene; John H Willis; John K Kelly
Journal:  PLoS Comput Biol       Date:  2011-11-03       Impact factor: 4.475

8.  Whole-Genome Sequencing to Identify Mutants and Polymorphisms in Chlamydomonas reinhardtii.

Authors:  Susan K Dutcher; Linya Li; Huawen Lin; Leslie Meyer; Thomas H Giddings; Alan L Kwan; Brian L Lewis
Journal:  G3 (Bethesda)       Date:  2012-01-01       Impact factor: 3.154

9.  Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing.

Authors:  Florencia del Viso; Dipankan Bhattacharya; Yong Kong; Michael J Gilchrist; Mustafa K Khokha
Journal:  BMC Genomics       Date:  2012-11-21       Impact factor: 3.969

10.  Whole genome sequencing identifies a deletion in protein phosphatase 2A that affects its stability and localization in Chlamydomonas reinhardtii.

Authors:  Huawen Lin; Michelle L Miller; David M Granas; Susan K Dutcher
Journal:  PLoS Genet       Date:  2013-09-26       Impact factor: 5.917

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  85 in total

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2.  Next-generation sequencing as a tool to quickly identify causative EMS-generated mutations.

Authors:  J M Thole; L C Strader
Journal:  Plant Signal Behav       Date:  2015

3.  Real-time resolution of point mutations that cause phenovariance in mice.

Authors:  Tao Wang; Xiaowei Zhan; Chun-Hui Bu; Stephen Lyon; David Pratt; Sara Hildebrand; Jin Huk Choi; Zhao Zhang; Ming Zeng; Kuan-wen Wang; Emre Turer; Zhe Chen; Duanwu Zhang; Tao Yue; Ying Wang; Hexin Shi; Jianhui Wang; Lei Sun; Jeff SoRelle; William McAlpine; Noelle Hutchins; Xiaoming Zhan; Maggy Fina; Rochelle Gobert; Jiexia Quan; McKensie Kreutzer; Stephanie Arnett; Kimberly Hawkins; Ashley Leach; Christopher Tate; Chad Daniel; Carlos Reyna; Lauren Prince; Sheila Davis; Joel Purrington; Rick Bearden; Jennifer Weatherly; Danielle White; Jamie Russell; Qihua Sun; Miao Tang; Xiaohong Li; Lindsay Scott; Eva Marie Y Moresco; Gerald M McInerney; Gunilla B Karlsson Hedestam; Yang Xie; Bruce Beutler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

4.  Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Authors:  Virginie Garcia; Cécile Bres; Daniel Just; Lucie Fernandez; Fabienne Wong Jun Tai; Jean-Philippe Mauxion; Marie-Christine Le Paslier; Aurélie Bérard; Dominique Brunel; Koh Aoki; Saleh Alseekh; Alisdair R Fernie; Paul D Fraser; Christophe Rothan
Journal:  Nat Protoc       Date:  2016-11-03       Impact factor: 13.491

Review 5.  Next-Generation Sequencing-Based Approaches for Mutation Mapping and Identification in Caenorhabditis elegans.

Authors:  Maria Doitsidou; Sophie Jarriault; Richard J Poole
Journal:  Genetics       Date:  2016-10       Impact factor: 4.562

6.  Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition.

Authors:  Qing Sang; Alice Pajoro; Hequan Sun; Baoxing Song; Xia Yang; Sara C Stolze; Fernando Andrés; Korbinian Schneeberger; Hirofumi Nakagami; George Coupland
Journal:  Plant Cell       Date:  2020-03-04       Impact factor: 11.277

7.  Next-Generation Sequencing for Identification of EMS-Induced Mutations in Caenorhabditis elegans.

Authors:  Nicolas J Lehrbach; Fei Ji; Ruslan Sadreyev
Journal:  Curr Protoc Mol Biol       Date:  2017-01-05

Review 8.  High-throughput functional genomics using CRISPR-Cas9.

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Journal:  Nat Rev Genet       Date:  2015-04-09       Impact factor: 53.242

9.  Next generation sequencing data for use in risk assessment.

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Journal:  Curr Opin Toxicol       Date:  2019-03-08

10.  Multidimensional chemical control of CRISPR-Cas9.

Authors:  Basudeb Maji; Christopher L Moore; Bernd Zetsche; Sara E Volz; Feng Zhang; Matthew D Shoulders; Amit Choudhary
Journal:  Nat Chem Biol       Date:  2016-10-31       Impact factor: 15.040

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