| Literature DB >> 25110030 |
Richard W P Smith1, Tajekesa K P Blee1, Nicola K Gray1.
Abstract
PABPs [poly(A)-binding proteins] bind to the poly(A) tail of eukaryotic mRNAs and are conserved in species ranging from yeast to human. The prototypical cytoplasmic member, PABP1, is a multifunctional RNA-binding protein with roles in global and mRNA-specific translation and stability, consistent with a function as a central regulator of mRNA fate in the cytoplasm. More limited insight into the molecular functions of other family members is available. However, the consequences of disrupting PABP function in whole organisms is less clear, particularly in vertebrates, and even more so in mammals. In the present review, we discuss current and emerging knowledge with respect to the functions of PABP family members in whole animal studies which, although incomplete, already underlines their biological importance and highlights the need for further intensive research in this area.Entities:
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Year: 2014 PMID: 25110030 PMCID: PMC4128646 DOI: 10.1042/BST20140111
Source DB: PubMed Journal: Biochem Soc Trans ISSN: 0300-5127 Impact factor: 5.407
Figure 1Relatedness and domain organization of PABP family members
(A) Domain organization of PABPs. Top: vertebrate PABPC1, PABPC4, ePABP, tPABP (mammalian-specific), D. melanogaster dPABP and C. elegans/C. briggsae PAB-1 and PAB-2 (all predominately cytoplasmic). Middle: mammalian-specific PABPC5 (cytoplasmic). Bottom: PABPN1 (nuclear) and ePABP2 (cytoplasmic). Linker, proline/glutamine-rich variable linker region. (B) Phylogenetic tree of PABPC family proteins, rooted to human hnRNPA1 (heterogeneous nuclear ribonucleoprotein A1), an RRM-containing RNA-binding protein. Cb, C. briggsae; Ce, C. elegans; Dm, D. melanogaster; Hs, Homo sapiens; Mm, Mus musculus; Xl, X. laevis.
Figure 2Molecular functions associated with PABP1
(A) PABP1 enhances global translation by binding to the poly(A) tail and interacting with factors at the mRNA 5′-end to recruit ribosomal subunits. (B) PABP1 stabilizes mRNAs by blocking access of deadenylases to the poly(A) tail, but also recruits deadenylases to the mRNA. This may be linked to translational termination. (C) An example of an mRNA-specific role in stability where PABP1 interaction with 3′-UTR-binding proteins blocks deadenylation and endonucleotic cleavage within the 3′-UTR. (D, panel i) PABP1 plays a role in correct termination at stop codons ensuring that the nonsense-mediated decay pathway is not activated. (D, panel ii) PABP1 does not participate in termination at premature termination codons (PTCs), termination is aberrant and mRNA decay ensues. (E) PABP1 enhances miRNA-mediated translational repression and deadenylation via its interaction with the miRNA-containing RISC complex. (F) An example of PABP1 acting in mRNA-specific translational repression when bound as part of a 5′-UTR repressive complex that blocks ribosome assembly. (G) PABP1 can act as an mRNA-specific activator when recruited to the 3′-UTR by other RNA-binding proteins or regulatory elements. Table 1 summarizes functions shown for different family members in the species discussed in this Figure.
Molecular functions of PABPs
Functions are shown in italics where direct evidence is absent and in bold where substantive or multiple lines of evidence are available. Indirect or contradictory experimental evidence is shown in italics. Protein–protein interactions and RNA binding have not been included for brevity. PABPs are only listed where evidence is available.
| (a) Invertebrates | ||
|---|---|---|
| PABP | Molecular function | Evidence |
| • | ||
| dPABP | • Depletion or depletion/add-back experiments with reporter mRNAs [ | |
| • Depletion/add-back experiments with reporter mRNAs [ | ||
| • Reporter assays using mutants that impede dPABP protein interactions [ | ||
| • Overexpression experiments using tethering assays [ | ||
| • Reporter and tethering assays [ | ||
| • Knockdown effects on reporter and endogenous mRNA [ | ||
| • | ||
| • | ||
| (b) Non-mammalian vertebrates | ||
| PABP | Molecular function | Evidence |
| PABP1 | • Tethering assays [ | |
| • Overexpression studies [ | ||
| ePABP | • | |
| • Sequestration/add-back with endogenous mRNAs [ | ||
| • Depletion effects on reporter mRNAs [ | ||
| PABP4 | • | |
| (c) Mammals | ||
| PABP | Molecular function | Evidence |
| PABP1 | Extensively reviewed [ | |
| Recently reviewed [ | ||
| Recently reviewed [ | ||
| Recently reviewed [ | ||
| Recently reviewed [ | ||
| ePABP | • Effect of knockout on endogenous mRNAs [ | |
| tPABP | • | |
| PABP4 | Enhances translation (global and/or | • Slight augmentation of reporter mRNA translation [ |
| mRNA-specific) | • | |
| • Effect of knockdown on endogenous mRNAs [ | ||