Literature DB >> 24997862

Spatial control of membrane receptor function using ligand nanocalipers.

Alan Shaw1, Vanessa Lundin2, Ekaterina Petrova3, Ferenc Fördős4, Erik Benson4, Abdullah Al-Amin3, Anna Herland3, Andries Blokzijl5, Björn Högberg1, Ana I Teixeira2.   

Abstract

The spatial organization of membrane-bound ligands is thought to regulate receptor-mediated signaling. However, direct regulation of receptor function by nanoscale distribution of ligands has not yet been demonstrated, to our knowledge. We developed rationally designed DNA origami nanostructures modified with ligands at well-defined positions. Using these 'nanocalipers' to present ephrin ligands, we showed that the nanoscale spacing of ephrin-A5 directs the levels of EphA2 receptor activation in human breast cancer cells. Furthermore, we found that the nanoscale distribution of ephrin-A5 regulates the invasive properties of breast cancer cells. Our ligand nanocaliper approach has the potential to provide insight into the roles of ligand nanoscale spatial distribution in membrane receptor-mediated signaling.

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Year:  2014        PMID: 24997862     DOI: 10.1038/nmeth.3025

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  36 in total

Review 1.  Spatial organization of transmembrane receptor signalling.

Authors:  Ioanna Bethani; Sigrid S Skånland; Ivan Dikic; Amparo Acker-Palmer
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

2.  Architecture of Eph receptor clusters.

Authors:  Juha P Himanen; Laila Yermekbayeva; Peter W Janes; John R Walker; Kai Xu; Lakmali Atapattu; Kanagalaghatta R Rajashankar; Anneloes Mensinga; Martin Lackmann; Dimitar B Nikolov; Sirano Dhe-Paganon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-26       Impact factor: 11.205

Review 3.  Eph receptors and ephrins in cancer: bidirectional signalling and beyond.

Authors:  Elena B Pasquale
Journal:  Nat Rev Cancer       Date:  2010-03       Impact factor: 60.716

4.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

5.  A primer to scaffolded DNA origami.

Authors:  Carlos Ernesto Castro; Fabian Kilchherr; Do-Nyun Kim; Enrique Lin Shiao; Tobias Wauer; Philipp Wortmann; Mark Bathe; Hendrik Dietz
Journal:  Nat Methods       Date:  2011-03       Impact factor: 28.547

6.  A conditional feedback loop regulates Ras activity through EphA2.

Authors:  Madhu Macrae; Richard M Neve; Pablo Rodriguez-Viciana; Christopher Haqq; Jennifer Yeh; Chira Chen; Joe W Gray; Frank McCormick
Journal:  Cancer Cell       Date:  2005-08       Impact factor: 31.743

7.  Restriction of receptor movement alters cellular response: physical force sensing by EphA2.

Authors:  Khalid Salaita; Pradeep M Nair; Rebecca S Petit; Richard M Neve; Debopriya Das; Joe W Gray; Jay T Groves
Journal:  Science       Date:  2010-03-12       Impact factor: 47.728

8.  Direct observation of individual endogenous protein complexes in situ by proximity ligation.

Authors:  Ola Söderberg; Mats Gullberg; Malin Jarvius; Karin Ridderstråle; Karl-Johan Leuchowius; Jonas Jarvius; Kenneth Wester; Per Hydbring; Fuad Bahram; Lars-Gunnar Larsson; Ulf Landegren
Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

9.  GelBandFitter--a computer program for analysis of closely spaced electrophoretic and immunoblotted bands.

Authors:  Mihail I Mitov; Marion L Greaser; Kenneth S Campbell
Journal:  Electrophoresis       Date:  2009-03       Impact factor: 3.535

10.  Plasma membrane domain organization regulates EGFR signaling in tumor cells.

Authors:  Patrick Lajoie; Emily A Partridge; Ginette Guay; Jacky G Goetz; Judy Pawling; Annick Lagana; Bharat Joshi; James W Dennis; Ivan R Nabi
Journal:  J Cell Biol       Date:  2007-10-15       Impact factor: 10.539

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  66 in total

Review 1.  DNA nanotechnology from the test tube to the cell.

Authors:  Yuan-Jyue Chen; Benjamin Groves; Richard A Muscat; Georg Seelig
Journal:  Nat Nanotechnol       Date:  2015-09       Impact factor: 39.213

Review 2.  DNA Origami: Folded DNA-Nanodevices That Can Direct and Interpret Cell Behavior.

Authors:  Cathal J Kearney; Christopher R Lucas; Fergal J O'Brien; Carlos E Castro
Journal:  Adv Mater       Date:  2016-02-03       Impact factor: 30.849

3.  DNA rendering of polyhedral meshes at the nanoscale.

Authors:  Erik Benson; Abdulmelik Mohammed; Johan Gardell; Sergej Masich; Eugen Czeizler; Pekka Orponen; Björn Högberg
Journal:  Nature       Date:  2015-07-23       Impact factor: 49.962

4.  Barcoded DNA origami structures for multiplexed optimization and enrichment of DNA-based protein-binding cavities.

Authors:  Ali Aghebat Rafat; Sandra Sagredo; Melissa Thalhammer; Friedrich C Simmel
Journal:  Nat Chem       Date:  2020-07-13       Impact factor: 24.427

5.  Spatially and Temporally Controlled Hydrogels for Tissue Engineering.

Authors:  Jeroen Leijten; Jungmok Seo; Kan Yue; Grissel Trujillo-de Santiago; Ali Tamayol; Guillermo U Ruiz-Esparza; Su Ryon Shin; Roholah Sharifi; Iman Noshadi; Mario Moisés Álvarez; Yu Shrike Zhang; Ali Khademhosseini
Journal:  Mater Sci Eng R Rep       Date:  2017-07-25       Impact factor: 36.214

6.  Extending the Capabilities of Molecular Force Sensors via DNA Nanotechnology.

Authors:  Susana M Beltrán; Marvin J Slepian; Rebecca E Taylor
Journal:  Crit Rev Biomed Eng       Date:  2020

7.  Sequence-Directed Covalent Protein-DNA Linkages in a Single Step Using HUH-Tags.

Authors:  Klaus N Lovendahl; Amanda N Hayward; Wendy R Gordon
Journal:  J Am Chem Soc       Date:  2017-05-16       Impact factor: 15.419

Review 8.  Membrane receptor activation mechanisms and transmembrane peptide tools to elucidate them.

Authors:  Justin M Westerfield; Francisco N Barrera
Journal:  J Biol Chem       Date:  2019-12-25       Impact factor: 5.157

9.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

Review 10.  The Lateral Organization and Mobility of Plasma Membrane Components.

Authors:  Ken Jacobson; Ping Liu; B Christoffer Lagerholm
Journal:  Cell       Date:  2019-05-02       Impact factor: 41.582

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