Literature DB >> 24993894

Evaluating dynamic bivariate correlations in resting-state fMRI: a comparison study and a new approach.

Martin A Lindquist1, Yuting Xu2, Mary Beth Nebel3, Brain S Caffo2.   

Abstract

To date, most functional Magnetic Resonance Imaging (fMRI) studies have assumed that the functional connectivity (FC) between time series from distinct brain regions is constant across time. However, recently, there has been an increased interest in quantifying possible dynamic changes in FC during fMRI experiments, as it is thought that this may provide insight into the fundamental workings of brain networks. In this work we focus on the specific problem of estimating the dynamic behavior of pair-wise correlations between time courses extracted from two different regions of the brain. We critique the commonly used sliding-window technique, and discuss some alternative methods used to model volatility in the finance literature that could also prove to be useful in the neuroimaging setting. In particular, we focus on the Dynamic Conditional Correlation (DCC) model, which provides a model-based approach towards estimating dynamic correlations. We investigate the properties of several techniques in a series of simulation studies and find that DCC achieves the best overall balance between sensitivity and specificity in detecting dynamic changes in correlations. We also investigate its scalability beyond the bivariate case to demonstrate its utility for studying dynamic correlations between more than two brain regions. Finally, we illustrate its performance in an application to test-retest resting state fMRI data.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dynamic conditional correlations; Dynamics; Functional connectivity; Resting state; fMRI

Mesh:

Year:  2014        PMID: 24993894      PMCID: PMC4165690          DOI: 10.1016/j.neuroimage.2014.06.052

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  16 in total

1.  A sliding time-window ICA reveals spatial variability of the default mode network in time.

Authors:  Vesa Kiviniemi; Tapani Vire; Jukka Remes; Ahmed Abou Elseoud; Tuomo Starck; Osmo Tervonen; Juha Nikkinen
Journal:  Brain Connect       Date:  2011

2.  Short-time windows of correlation between large-scale functional brain networks predict vigilance intraindividually and interindividually.

Authors:  Garth John Thompson; Matthew Evan Magnuson; Michael Donelyn Merritt; Hillary Schwarb; Wen-Ju Pan; Andrew McKinley; Lloyd D Tripp; Eric H Schumacher; Shella Dawn Keilholz
Journal:  Hum Brain Mapp       Date:  2012-06-27       Impact factor: 5.038

3.  Multi-parametric neuroimaging reproducibility: a 3-T resource study.

Authors:  Bennett A Landman; Alan J Huang; Aliya Gifford; Deepti S Vikram; Issel Anne L Lim; Jonathan A D Farrell; John A Bogovic; Jun Hua; Min Chen; Samson Jarso; Seth A Smith; Suresh Joel; Susumu Mori; James J Pekar; Peter B Barker; Jerry L Prince; Peter C M van Zijl
Journal:  Neuroimage       Date:  2010-11-20       Impact factor: 6.556

4.  Modeling state-related fMRI activity using change-point theory.

Authors:  Martin A Lindquist; Christian Waugh; Tor D Wager
Journal:  Neuroimage       Date:  2007-01-23       Impact factor: 6.556

5.  A component based noise correction method (CompCor) for BOLD and perfusion based fMRI.

Authors:  Yashar Behzadi; Khaled Restom; Joy Liau; Thomas T Liu
Journal:  Neuroimage       Date:  2007-05-03       Impact factor: 6.556

6.  Dynamic connectivity regression: determining state-related changes in brain connectivity.

Authors:  Ivor Cribben; Ragnheidur Haraldsdottir; Lauren Y Atlas; Tor D Wager; Martin A Lindquist
Journal:  Neuroimage       Date:  2012-03-30       Impact factor: 6.556

Review 7.  Dynamic functional connectivity: promise, issues, and interpretations.

Authors:  R Matthew Hutchison; Thilo Womelsdorf; Elena A Allen; Peter A Bandettini; Vince D Calhoun; Maurizio Corbetta; Stefania Della Penna; Jeff H Duyn; Gary H Glover; Javier Gonzalez-Castillo; Daniel A Handwerker; Shella Keilholz; Vesa Kiviniemi; David A Leopold; Francesco de Pasquale; Olaf Sporns; Martin Walter; Catie Chang
Journal:  Neuroimage       Date:  2013-05-24       Impact factor: 6.556

8.  EEG correlates of time-varying BOLD functional connectivity.

Authors:  Catie Chang; Zhongming Liu; Michael C Chen; Xiao Liu; Jeff H Duyn
Journal:  Neuroimage       Date:  2013-01-31       Impact factor: 6.556

9.  Periodic changes in fMRI connectivity.

Authors:  Daniel A Handwerker; Vinai Roopchansingh; Javier Gonzalez-Castillo; Peter A Bandettini
Journal:  Neuroimage       Date:  2012-07-14       Impact factor: 6.556

10.  Non-stationarity in the "resting brain's" modular architecture.

Authors:  David T Jones; Prashanthi Vemuri; Matthew C Murphy; Jeffrey L Gunter; Matthew L Senjem; Mary M Machulda; Scott A Przybelski; Brian E Gregg; Kejal Kantarci; David S Knopman; Bradley F Boeve; Ronald C Petersen; Clifford R Jack
Journal:  PLoS One       Date:  2012-06-28       Impact factor: 3.240

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  110 in total

1.  Dynamic Functional Connectivity States Reflecting Psychotic-like Experiences.

Authors:  Anita D Barber; Martin A Lindquist; Pamela DeRosse; Katherine H Karlsgodt
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2017-09-28

2.  Bayesian switching factor analysis for estimating time-varying functional connectivity in fMRI.

Authors:  Jalil Taghia; Srikanth Ryali; Tianwen Chen; Kaustubh Supekar; Weidong Cai; Vinod Menon
Journal:  Neuroimage       Date:  2017-03-04       Impact factor: 6.556

3.  Integration of temporal and spatial properties of dynamic connectivity networks for automatic diagnosis of brain disease.

Authors:  Biao Jie; Mingxia Liu; Dinggang Shen
Journal:  Med Image Anal       Date:  2018-04-04       Impact factor: 8.545

4.  Testing group differences in brain functional connectivity: using correlations or partial correlations?

Authors:  Junghi Kim; Jeffrey R Wozniak; Bryon A Mueller; Wei Pan
Journal:  Brain Connect       Date:  2015-02-25

5.  Flexible Bayesian Dynamic Modeling of Correlation and Covariance Matrices.

Authors:  Shiwei Lan; Andrew Holbrook; Gabriel A Elias; Norbert J Fortin; Hernando Ombao; Babak Shahbaba
Journal:  Bayesian Anal       Date:  2019-11-04       Impact factor: 3.728

6.  Dynamic Functional Magnetic Resonance Imaging Connectivity Tensor Decomposition: A New Approach to Analyze and Interpret Dynamic Brain Connectivity.

Authors:  Fatemeh Mokhtari; Paul J Laurienti; W Jack Rejeski; Grey Ballard
Journal:  Brain Connect       Date:  2018-12-26

7.  Brain network dynamics in schizophrenia: Reduced dynamism of the default mode network.

Authors:  Akhil Kottaram; Leigh A Johnston; Luca Cocchi; Eleni P Ganella; Ian Everall; Christos Pantelis; Ramamohanarao Kotagiri; Andrew Zalesky
Journal:  Hum Brain Mapp       Date:  2019-01-21       Impact factor: 5.038

8.  Frequency-specific age-related decreased brain network diversity in cognitively healthy elderly: A whole-brain data-driven analysis.

Authors:  Wutao Lou; Defeng Wang; Adrian Wong; Winnie C W Chu; Vincent C T Mok; Lin Shi
Journal:  Hum Brain Mapp       Date:  2018-09-21       Impact factor: 5.038

9.  Evaluation of sliding window correlation performance for characterizing dynamic functional connectivity and brain states.

Authors:  Sadia Shakil; Chin-Hui Lee; Shella Dawn Keilholz
Journal:  Neuroimage       Date:  2016-03-04       Impact factor: 6.556

10.  The Temporal Instability of Resting State Network Connectivity in Intractable Epilepsy.

Authors:  Lucy F Robinson; Xiaosong He; Paul Barnett; Gaёlle E Doucet; Michael R Sperling; Ashwini Sharan; Joseph I Tracy
Journal:  Hum Brain Mapp       Date:  2016-09-15       Impact factor: 5.038

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