Literature DB >> 33868547

Flexible Bayesian Dynamic Modeling of Correlation and Covariance Matrices.

Shiwei Lan1, Andrew Holbrook2, Gabriel A Elias3, Norbert J Fortin3, Hernando Ombao4, Babak Shahbaba5.   

Abstract

Modeling correlation (and covariance) matrices can be challenging due to the positive-definiteness constraint and potential high-dimensionality. Our approach is to decompose the covariance matrix into the correlation and variance matrices and propose a novel Bayesian framework based on modeling the correlations as products of unit vectors. By specifying a wide range of distributions on a sphere (e.g. the squared-Dirichlet distribution), the proposed approach induces flexible prior distributions for covariance matrices (that go beyond the commonly used inverse-Wishart prior). For modeling real-life spatio-temporal processes with complex dependence structures, we extend our method to dynamic cases and introduce unit-vector Gaussian process priors in order to capture the evolution of correlation among components of a multivariate time series. To handle the intractability of the resulting posterior, we introduce the adaptive Δ-Spherical Hamiltonian Monte Carlo. We demonstrate the validity and flexibility of our proposed framework in a simulation study of periodic processes and an analysis of rat's local field potential activity in a complex sequence memory task.

Entities:  

Keywords:  dynamic covariance modeling; geometric methods; posterior contraction; spatio-temporal models; Δ-Spherical Hamiltonian Monte Carlo

Year:  2019        PMID: 33868547      PMCID: PMC8048134          DOI: 10.1214/19-ba1173

Source DB:  PubMed          Journal:  Bayesian Anal        ISSN: 1931-6690            Impact factor:   3.728


  12 in total

1.  Shrinkage estimators for covariance matrices.

Authors:  M J Daniels; R E Kass
Journal:  Biometrics       Date:  2001-12       Impact factor: 2.571

2.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

3.  A Sequence of events model of episodic memory shows parallels in rats and humans.

Authors:  Timothy A Allen; Andrea M Morris; Aaron T Mattfeld; Craig E L Stark; Norbert J Fortin
Journal:  Hippocampus       Date:  2014-05-23       Impact factor: 3.899

4.  Geodesic Lagrangian Monte Carlo over the space of positive definite matrices: with application to Bayesian spectral density estimation.

Authors:  Andrew Holbrook; Shiwei Lan; Alexander Vandenberg-Rodes; Babak Shahbaba
Journal:  J Stat Comput Simul       Date:  2017-12-27       Impact factor: 1.424

5.  A Bayesian supervised dual-dimensionality reduction model for simultaneous decoding of LFP and spike train signals.

Authors:  Andrew Holbrook; Alexander Vandenberg-Rodes; Norbert Fortin; Babak Shahbaba
Journal:  Stat (Int Stat Inst)       Date:  2017-02-07

6.  Evaluating dynamic bivariate correlations in resting-state fMRI: a comparison study and a new approach.

Authors:  Martin A Lindquist; Yuting Xu; Mary Beth Nebel; Brain S Caffo
Journal:  Neuroimage       Date:  2014-06-30       Impact factor: 6.556

7.  Markov Chain Monte Carlo from Lagrangian Dynamics.

Authors:  Shiwei Lan; Vasileios Stathopoulos; Babak Shahbaba; Mark Girolami
Journal:  J Comput Graph Stat       Date:  2015-04-01       Impact factor: 2.302

8.  Nonspatial sequence coding varies along the CA1 transverse axis.

Authors:  Chi-Wing Ng; Gabriel A Elias; Judith S A Asem; Timothy A Allen; Norbert J Fortin
Journal:  Behav Brain Res       Date:  2017-10-28       Impact factor: 3.332

9.  Nonspatial Sequence Coding in CA1 Neurons.

Authors:  Timothy A Allen; Daniel M Salz; Sam McKenzie; Norbert J Fortin
Journal:  J Neurosci       Date:  2016-02-03       Impact factor: 6.167

10.  Geodesic Monte Carlo on Embedded Manifolds.

Authors:  Simon Byrne; Mark Girolami
Journal:  Scand Stat Theory Appl       Date:  2013-09-13       Impact factor: 1.396

View more
  1 in total

1.  Modeling Dynamic Functional Connectivity with Latent Factor Gaussian Processes.

Authors:  Lingge Li; Dustin Pluta; Babak Shahbaba; Norbert Fortin; Hernando Ombao; Pierre Baldi
Journal:  Adv Neural Inf Process Syst       Date:  2019-12
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.