Literature DB >> 24956235

The bright future of single-molecule fluorescence imaging.

Manuel F Juette1, Daniel S Terry1, Michael R Wasserman1, Zhou Zhou1, Roger B Altman1, Qinsi Zheng2, Scott C Blanchard3.   

Abstract

Single-molecule Förster resonance energy transfer (smFRET) is an essential and maturing tool to probe biomolecular interactions and conformational dynamics in vitro and, increasingly, in living cells. Multi-color smFRET enables the correlation of multiple such events and the precise dissection of their order and timing. However, the requirements for good spectral separation, high time resolution, and extended observation times place extraordinary demands on the fluorescent labels used in such experiments. Together with advanced experimental designs and data analysis, the development of long-lasting, non-fluctuating fluorophores is therefore proving key to progress in the field. Recently developed strategies for obtaining ultra-stable organic fluorophores spanning the visible spectrum are underway that will enable multi-color smFRET studies to deliver on their promise of previously unachievable biological insights.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24956235      PMCID: PMC4123530          DOI: 10.1016/j.cbpa.2014.05.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  69 in total

1.  A photoprotection strategy for microsecond-resolution single-molecule fluorescence spectroscopy.

Authors:  Luis A Campos; Jianwei Liu; Xiang Wang; Ravishankar Ramanathan; Douglas S English; Victor Muñoz
Journal:  Nat Methods       Date:  2011-01-09       Impact factor: 28.547

2.  High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence.

Authors:  Jin Chen; Ravindra V Dalal; Alexey N Petrov; Albert Tsai; Seán E O'Leary; Karen Chapin; Janice Cheng; Mark Ewan; Pei-Lin Hsiung; Paul Lundquist; Stephen W Turner; David R Hsu; Joseph D Puglisi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

Review 3.  Advances in single-molecule fluorescence methods for molecular biology.

Authors:  Chirlmin Joo; Hamza Balci; Yuji Ishitsuka; Chittanon Buranachai; Taekjip Ha
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 4.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

Review 5.  Ultra-stable organic fluorophores for single-molecule research.

Authors:  Qinsi Zheng; Manuel F Juette; Steffen Jockusch; Michael R Wasserman; Zhou Zhou; Roger B Altman; Scott C Blanchard
Journal:  Chem Soc Rev       Date:  2014-02-21       Impact factor: 54.564

6.  Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging.

Authors:  Sebastian van de Linde; Ivan Krstić; Thomas Prisner; Sören Doose; Mike Heilemann; Markus Sauer
Journal:  Photochem Photobiol Sci       Date:  2010-12-10       Impact factor: 3.982

Review 7.  Single-molecule analysis of translational dynamics.

Authors:  Alexey Petrov; Jin Chen; Seán O'Leary; Albert Tsai; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

8.  Increasing the brightness of cyanine fluorophores for single-molecule and superresolution imaging.

Authors:  Kathrin Klehs; Christoph Spahn; Ulrike Endesfelder; Steven F Lee; Alexandre Fürstenberg; Mike Heilemann
Journal:  Chemphyschem       Date:  2013-12-02       Impact factor: 3.102

9.  Substrate-modulated gating dynamics in a Na+-coupled neurotransmitter transporter homologue.

Authors:  Yongfang Zhao; Daniel S Terry; Lei Shi; Matthias Quick; Harel Weinstein; Scott C Blanchard; Jonathan A Javitch
Journal:  Nature       Date:  2011-04-24       Impact factor: 49.962

10.  Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms.

Authors:  Fang Huang; Tobias M P Hartwich; Felix E Rivera-Molina; Yu Lin; Whitney C Duim; Jane J Long; Pradeep D Uchil; Jordan R Myers; Michelle A Baird; Walther Mothes; Michael W Davidson; Derek Toomre; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2013-05-26       Impact factor: 28.547

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  42 in total

1.  Structural Architecture of Prothrombin in Solution Revealed by Single Molecule Spectroscopy.

Authors:  Nicola Pozzi; Dominika Bystranowska; Xiaobing Zuo; Enrico Di Cera
Journal:  J Biol Chem       Date:  2016-07-19       Impact factor: 5.157

2.  Several hundred-fold enhanced fluorescence from single fluorophores assembled on silver nanoparticle-dielectric-metal substrate.

Authors:  Krishanu Ray; Ramachandram Badugu; Henryk Szmacinski; Joseph R Lakowicz
Journal:  Chem Commun (Camb)       Date:  2015-10-18       Impact factor: 6.222

3.  DNA probes that store mechanical information reveal transient piconewton forces applied by T cells.

Authors:  Rong Ma; Anna V Kellner; Victor Pui-Yan Ma; Hanquan Su; Brendan R Deal; Joshua M Brockman; Khalid Salaita
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-07       Impact factor: 11.205

4.  Extreme mechanical diversity of human telomeric DNA revealed by fluorescence-force spectroscopy.

Authors:  Jaba Mitra; Monika A Makurath; Thuy T M Ngo; Alice Troitskaia; Yann R Chemla; Taekjip Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-03       Impact factor: 11.205

Review 5.  Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope.

Authors:  Ameya P Jalihal; Paul E Lund; Nils G Walter
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

6.  Dynamics of P-type ATPase transport revealed by single-molecule FRET.

Authors:  Mateusz Dyla; Daniel S Terry; Magnus Kjaergaard; Thomas L-M Sørensen; Jacob Lauwring Andersen; Jens P Andersen; Charlotte Rohde Knudsen; Roger B Altman; Poul Nissen; Scott C Blanchard
Journal:  Nature       Date:  2017-11-08       Impact factor: 49.962

7.  Dense small molecule labeling enables activator-dependent STORM by proximity mapping.

Authors:  Ye Chen; Min Gu; Peter W Gunning; Sarah M Russell
Journal:  Histochem Cell Biol       Date:  2016-05-31       Impact factor: 4.304

8.  Conformational Heterogeneity and FRET Data Interpretation for Dimensions of Unfolded Proteins.

Authors:  Jianhui Song; Gregory-Neal Gomes; Tongfei Shi; Claudiu C Gradinaru; Hue Sun Chan
Journal:  Biophys J       Date:  2017-09-05       Impact factor: 4.033

9.  Site-Specific Three-Color Labeling of α-Synuclein via Conjugation to Uniquely Reactive Cysteines during Assembly by Native Chemical Ligation.

Authors:  Taehyung C Lee; Crystal R Moran; Philip A Cistrone; Philip E Dawson; Ashok A Deniz
Journal:  Cell Chem Biol       Date:  2018-04-19       Impact factor: 8.116

Review 10.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

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