Literature DB >> 18412538

Advances in single-molecule fluorescence methods for molecular biology.

Chirlmin Joo1, Hamza Balci, Yuji Ishitsuka, Chittanon Buranachai, Taekjip Ha.   

Abstract

Ever since their introduction two decades ago, single-molecule (SM) fluorescence methods have matured and branched out to address numerous biological questions, which were inaccessible via ensemble measurements. Among the current arsenal, SM fluorescence techniques have capabilities of probing the dynamic interactions of nucleic acids and proteins via Förster (fluorescence) resonance energy transfer (FRET), tracking single particles over microns of distances, and deciphering the rotational motion of multisubunit systems. In this exciting era of transitioning from in vitro to in vivo and in situ conditions, it is anticipated that SM fluorescence methodology will become a common tool of molecular biology.

Mesh:

Year:  2008        PMID: 18412538     DOI: 10.1146/annurev.biochem.77.070606.101543

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  240 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

Review 2.  Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging.

Authors:  Taekjip Ha; Philip Tinnefeld
Journal:  Annu Rev Phys Chem       Date:  2012-01-30       Impact factor: 12.703

Review 3.  Choosing an effective protein bioconjugation strategy.

Authors:  Nicholas Stephanopoulos; Matthew B Francis
Journal:  Nat Chem Biol       Date:  2011-11-15       Impact factor: 15.040

4.  Fluorescence characteristics of isolated dye molecules within silicalite-1 channels.

Authors:  Tae Kyu Shim; Myoung Hee Lee; Doseok Kim; Hyun Sung Kim; Kyung Byung Yoon
Journal:  J Fluoresc       Date:  2012-06-28       Impact factor: 2.217

Review 5.  Fluorescence-based transient state monitoring for biomolecular spectroscopy and imaging.

Authors:  Jerker Widengren
Journal:  J R Soc Interface       Date:  2010-04-07       Impact factor: 4.118

6.  Bioanalytical applications of surface-enhanced Raman spectroscopy: de novo molecular identification.

Authors:  Anh H Nguyen; Emily A Peters; Zachary D Schultz
Journal:  Rev Anal Chem       Date:  2017-07-05       Impact factor: 3.067

7.  Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.

Authors:  Gregor Heiss; Evelyn Ploetz; Lena Voith von Voithenberg; Ramya Viswanathan; Samson Glaser; Peter Schluesche; Sushi Madhira; Michael Meisterernst; David T Auble; Don C Lamb
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

Review 8.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

9.  Compact quantum dots for single-molecule imaging.

Authors:  Andrew M Smith; Shuming Nie
Journal:  J Vis Exp       Date:  2012-10-09       Impact factor: 1.355

10.  "Cell biology meets physiology: functional organization of vertebrate plasma membranes"--the immunological synapse.

Authors:  Silvia Curado; Sudha Kumari; Michael L Dustin
Journal:  Curr Top Membr       Date:  2013       Impact factor: 3.049

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