| Literature DB >> 24932582 |
Li Liu1, Qinji Su2, Lixia Li1, Xiaohui Lin1, Yu Gan1, Sidong Chen1.
Abstract
OBJECTIVE: We performed an updated meta-analysis, using a comprehensive strategy of a logistic regression and a model-free approach, to evaluate more precisely the role of the rs4444235 variant near the Bone morphogenetic protein-4 (BMP4) gene in susceptibility to colorectal cancer (CRC).Entities:
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Year: 2014 PMID: 24932582 PMCID: PMC4059743 DOI: 10.1371/journal.pone.0100133
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow chart of study selection process.
Characteristics of included studies in the meta-analysis of rs4444235 and colorectal cancer.
| First author | Publication year | Ethnicity | Study design | Source of controls | MAF in controls | Cases | Controls | ||||
| TT | TC | CC | TT | TC | CC | ||||||
| Fernandez-Rozadilla | 2010 | Caucasian | Replication | Hospital | 0.544 | 168 | 436 | 242 | 196 | 411 | 274 |
| von Holst S | 2010 | Caucasian | Replication | Population | 0.439 | 573 | 829 | 356 | 533 | 838 | 326 |
| Xiong F | 2010 | Asian | Replication | Population | 0.443 | 583 | 1091 | 427 | 639 | 1085 | 399 |
| Kupfer SS | 2010 | African | Replication | Hospital | 0.334 | 332 | 319 | 62 | 400 | 418 | 97 |
| Kupfer SS | 2010 | Caucasian | Replication | Hospital | 0.475 | 93 | 183 | 97 | 100 | 163 | 83 |
| Ho JW | 2011 | Asian | Replication | Hospital | 0.522 | 170 | 350 | 195 | 168 | 346 | 199 |
| Tomlinson (UK1) | 2011 | Caucasian | GWAS | Population | 0.452 | 233 | 441 | 247 | 274 | 470 | 184 |
| Tomlinson (SCOT1) | 2011 | Caucasian | GWAS | Population | 0.451 | 256 | 500 | 220 | 294 | 512 | 195 |
| Tomlinson (SCOT2) | 2011 | Caucasian | GWAS | Population | 0.451 | 540 | 1017 | 449 | 630 | 999 | 428 |
| Tomlinson (VQ58) | 2011 | Caucasian | GWAS | Population | 0.468 | 503 | 886 | 410 | 773 | 1312 | 603 |
| Tomlinson (CCFR) | 2011 | Caucasian | GWAS | Population | 0.476 | 290 | 595 | 298 | 274 | 496 | 227 |
| Tomlinson (AU) | 2011 | Caucasian | GWAS | Population | 0.439 | 124 | 208 | 108 | 129 | 233 | 76 |
| Tomlinson (HEL) | 2011 | Caucasian | Replication | Population | 0.426 | 272 | 459 | 202 | 273 | 405 | 150 |
| Tomlinson (SEARCH) | 2011 | Caucasian | Replication | Population | 0.471 | 618 | 1083 | 537 | 650 | 1086 | 519 |
| Tomlinson (COIN/NBS) | 2011 | Caucasian | Replication | population | 0.462 | 593 | 1044 | 510 | 722 | 1246 | 532 |
| Tomlinson (UK3) | 2011 | Caucasian | Replication | Population | 0.472 | 2012 | 3865 | 1828 | 1247 | 2116 | 1006 |
| Tomlinson (SCOT3) | 2011 | Caucasian | Replication | Population | 0.455 | 305 | 554 | 268 | 628 | 1130 | 432 |
| Tomlinson (UK4) | 2011 | Caucasian | Replication | Population | 0.463 | 141 | 306 | 127 | 288 | 544 | 210 |
| Li FX | 2012 | Asian | Replication | Hospital | 0.468 | 35 | 122 | 58 | 71 | 141 | 54 |
Abbreviations: GWAS, genome-wide association study; MAF, minor allele frequency (the C allele of rs4444235).
Meta-analysis of rs4444235 and colorectal cancer risk.
| Study characteristics | Cases/controls | Genetic model | OR (95%CI) |
|
| |
| Total (N = 19) | 28770/28234 | Additive Model | 1.08 (1.04–1.11) | 36.1 | 0.059 | |
| ORG | 1.09 (1.05–1.14) | 35.6 | 0.063 | |||
| Ethnicity | Caucasian (N = 15) | 25026/24217 | Additive Model | 1.08 (1.05–1.11) | 11.8 | 0.321 |
| Asian (N = 3) | 3031/3102 | Additive Model | 1.11 (0.95–1.31) | 68.9 | 0.040 | |
| African (N = 1) | 713/915 | Additive Model | 0.89 (0.77–1.04) | |||
| Caucasian (N = 15) | ORG | 1.10 (1.06–1.14) | 11.7 | 0.322 | ||
| Asian (N = 3) | ORG | 1.14 (0.94–1.37) | 68.8 | 0.041 | ||
| African (N = 1) | ORG | 0.88 (0.74–1.05) | ||||
| Sources of controls | Population based (N = 13) | 23807/22990 | Additive Model | 1.08 (1.05–1.12) | 16.6 | 0.277 |
| Hospital based (N = 6) | 4963/5244 | Additive Model | 1.05 (0.95–1.15) | 59.5 | 0.030 | |
| Population based (N = 13) | ORG | 1.10 (1.06–1.14) | 15.3 | 0.290 | ||
| Hospital based (N = 6) | ORG | 1.06 (0.94–1.18) | 59.3 | 0.031 | ||
| Study design | GWAS (N = 6) | 7325/8109 | Additive model | 1.12 (1.06–1.18) | 33.4 | 0.185 |
| Replication (N = 13) | 21445/20125 | Additive model | 1.06 (1.05–1.11) | 33.6 | 0.114 | |
| GWAS (N = 6) | ORG | 1.14 (1.07–1.22) | 31.0 | 0.203 | ||
| Replication (N = 13) | ORG | 1.07 (1.03–1.12) | 33.3 | 0.116 | ||
| Total sample size | ≤2000 (N = 10) | 6706/7358 | Additive model | 1.11 (1.03–1.19) | 57.6 | 0.012 |
| >20000 (N = 9) | 22064/20876 | Additive model | 1.07 (1.05–1.11) | 0.0 | 0.674 | |
| ≤2000 (N = 10) | ORG | 1.13 (1.03–1.23) | 57.1 | 0.013 | ||
| >20000 (N = 9) | ORG | 1.08 (1.05–1.12) | 0.0 | 0.666 | ||
Abbreviations: GWAS, genome-wide association study; OR, odds ratio; 95% CI, 95% confidence interval; ORG, generalized OR.
Figure 2The forest plot of the association between rs4444235 and colorectal cancer risk in the additive model.
Sensitivity analysis of rs4444235 and colorectal cancer risk.
| Omitted study | Additive model | ORG | ||||
| OR (95% CI) |
|
| OR (95% CI) |
|
| |
| Fernandez (EPICOLON) | 1.08 (1.05–1.12) | 0.059 | 37.0 | 1.10 (1.06–1.14) | 0.065 | 35.9 |
| von Holst | 1.08 (1.05–1.12) | 0.082 | 33.6 | 1.10 (1.06–1.14) | 0.091 | 32.4 |
| Xiong (Beijing) | 1.08 (1.04–1.12) | 0.043 | 39.6 | 1.09 (1.05–1.14) | 0.046 | 39.0 |
| Kupfer (UC) | 1.08 (1.05–1.12) | 0.173 | 23.8 | 1.10 (1.06–1.14) | 0.174 | 23.7 |
| Kupfer (UNC) | 1.08 (1.04–1.11) | 0.045 | 39.3 | 1.09 (1.05–1.14) | 0.048 | 38.7 |
| Ho (HK) | 1.08 (1.05–1.12) | 0.062 | 36.4 | 1.10 (1.06–1.14) | 0.066 | 35.8 |
| Tomlinson (UK1) | 1.07 (1.04–1.10) | 0.159 | 25.2 | 1.08 (1.05–1.12) | 0.164 | 24.6 |
| Tomlinson (SCOT1) | 1.08 (1.04–1.11) | 0.053 | 37.9 | 1.09 (1.05–1.13) | 0.056 | 37.4 |
| Tomlinson (SCOT2) | 1.08 (1.04–1.11) | 0.051 | 38.3 | 1.09 (1.05–1.14) | 0.055 | 37.5 |
| Tomlinson (VQ58) | 1.08 (1.05–1.12) | 0.062 | 36.5 | 1.10 (1.06–1.14) | 0.065 | 36.0 |
| Tomlinson (CCFR) | 1.08 (1.04–1.11) | 0.047 | 38.9 | 1.09 (1.05–1.14) | 0.051 | 38.3 |
| Tomlinson (AU) | 1.08 (1.04–1.11) | 0.057 | 37.2 | 1.09 (1.05–1.13) | 0.058 | 37.0 |
| Tomlinson (HEL) | 1.08 (1.04–1.11) | 0.060 | 36.7 | 1.09 (1.05–1.13) | 0.064 | 36.2 |
| Tomlinson (SEARCH) | 1.08 (1.05–1.12) | 0.049 | 38.5 | 1.10 (1.05–1.14) | 0.052 | 38.0 |
| Tomlinson (COIN/NBS) | 1.08 (1.04–1.12) | 0.043 | 39.7 | 1.09 (1.05–1.14) | 0.046 | 39.1 |
| Tomlinson (UK3) | 1.08 (1.04–1.12) | 0.045 | 39.3 | 1.10 (1.05–1.14) | 0.047 | 38.9 |
| Tomlinson (SCOT3) | 1.08 (1.04–1.11) | 0.052 | 38.0 | 1.09 (1.05–1.14) | 0.054 | 37.7 |
| Tomlinson (UK4) | 1.08 (1.04–1.11) | 0.045 | 39.2 | 1.09 (1.05–1.14) | 0.049 | 38.6 |
| Li (Jiangxi) | 1.07 (1.04–1.11) | 0.145 | 26.5 | 1.09 (1.05–1.13) | 0.153 | 25.7 |
Abbreviations: OR, odds ratio; 95% CI, 95% confidence interval; ORG, generalized OR.
*P values for heterogeneity were calculated by the Cochran’s χ2 based Q test.