Literature DB >> 21071539

Generalizability and epidemiologic characterization of eleven colorectal cancer GWAS hits in multiple populations.

Jing He1, Lynne R Wilkens, Daniel O Stram, Laurence N Kolonel, Brian E Henderson, Anna H Wu, Loic Le Marchand, Christopher A Haiman.   

Abstract

BACKGROUND: Genome-wide association studies (GWAS) in populations of European ancestry have identified several loci that confer an increased risk of colorectal cancer (CRC).
METHODS: We studied the generalizability of the associations with 11 risk variants for CRC on 8q23 (rs16892766), 8q24 (rs6983267), 9p24 (rs719725), 10p14 (rs10795668), 11q23 (rs3802842), 14q22 (rs4444235), 15q13 (rs4779584), 16q22 (rs9929218), 18q21 (rs4939827), 19q13 (rs10411210), and 20p12 (rs961253) in a multiethnic sample of 2,472 CRC cases, 839 adenoma cases and 4,466 controls comprised of European American, African American, Native Hawaiian, Japanese American, and Latino men and women. Because findings for CRC and adenoma were similar, we combined both groups in the analyses.
RESULTS: We confirmed the associations with an increased risk of CRC/adenoma for the 8q24, 11q23 and 15q13 loci in European Americans, and observed significant associations between the 8q24 and 20p12 loci with CRC/adenoma risk in African Americans. Moreover, we found statistically significant cumulative effects of risk alleles on CRC/adenoma risk in all populations (odds ratio [OR] per allele = 1.07-1.09, P ≤ 0.039) except in Japanese Americans (OR = 1.01, P = 0.52). We found heterogeneity in the associations by tumor subsite, age of CRC/adenoma onset, sex, body mass index (BMI), and smoking status for some of the variants.
CONCLUSIONS: These results provide evidence that the known variants are in aggregate significantly associated with CRC/adenoma risk in multiple populations except Japanese Americans, and the influences may differ across groups defined by clinicopathological characteristics for some variants. IMPACT: These results underline the importance of studying the epidemiologic architecture of these genetic effects in large and diverse populations. ©2011 AACR.

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Year:  2010        PMID: 21071539      PMCID: PMC3081784          DOI: 10.1158/1055-9965.EPI-10-0892

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  32 in total

1.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

2.  A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk.

Authors:  Peter Broderick; Luis Carvajal-Carmona; Alan M Pittman; Emily Webb; Kimberley Howarth; Andrew Rowan; Steven Lubbe; Sarah Spain; Kate Sullivan; Sarah Fielding; Emma Jaeger; Jayaram Vijayakrishnan; Zoe Kemp; Maggie Gorman; Ian Chandler; Elli Papaemmanuil; Steven Penegar; Wendy Wood; Gabrielle Sellick; Mobshra Qureshi; Ana Teixeira; Enric Domingo; Ella Barclay; Lynn Martin; Oliver Sieber; David Kerr; Richard Gray; Julian Peto; Jean-Baptiste Cazier; Ian Tomlinson; Richard S Houlston
Journal:  Nat Genet       Date:  2007-10-14       Impact factor: 38.330

3.  Allelic discrimination by nick-translation PCR with fluorogenic probes.

Authors:  L G Lee; C R Connell; W Bloch
Journal:  Nucleic Acids Res       Date:  1993-08-11       Impact factor: 16.971

4.  Validation of a quantitative diet history method in Hawaii.

Authors:  J H Hankin; L R Wilkens; L N Kolonel; C N Yoshizawa
Journal:  Am J Epidemiol       Date:  1991-03-15       Impact factor: 4.897

5.  A multiethnic cohort in Hawaii and Los Angeles: baseline characteristics.

Authors:  L N Kolonel; B E Henderson; J H Hankin; A M Nomura; L R Wilkens; M C Pike; D O Stram; K R Monroe; M E Earle; F S Nagamine
Journal:  Am J Epidemiol       Date:  2000-02-15       Impact factor: 4.897

6.  Association studies on 11 published colorectal cancer risk loci.

Authors:  S von Holst; S Picelli; D Edler; C Lenander; J Dalén; F Hjern; N Lundqvist; U Lindforss; L Påhlman; K Smedh; A Törnqvist; J Holm; M Janson; M Andersson; S Ekelund; L Olsson; S Ghazi; N Papadogiannakis; A Tenesa; S M Farrington; H Campbell; M G Dunlop; A Lindblom
Journal:  Br J Cancer       Date:  2010-07-20       Impact factor: 7.640

7.  A common genetic risk factor for colorectal and prostate cancer.

Authors:  Christopher A Haiman; Loïc Le Marchand; Jennifer Yamamato; Daniel O Stram; Xin Sheng; Laurence N Kolonel; Anna H Wu; David Reich; Brian E Henderson
Journal:  Nat Genet       Date:  2007-07-08       Impact factor: 38.330

8.  Variants on 9p24 and 8q24 are associated with risk of colorectal cancer: results from the Colon Cancer Family Registry.

Authors:  Jenny N Poynter; Jane C Figueiredo; David V Conti; Kathleen Kennedy; Steven Gallinger; Kimberly D Siegmund; Graham Casey; Stephen N Thibodeau; Mark A Jenkins; John L Hopper; Graham B Byrnes; John A Baron; Ellen L Goode; Maarit Tiirikainen; Noralane Lindor; John Grove; Polly Newcomb; Jeremy Jass; Joanne Young; John D Potter; Robert W Haile; David J Duggan; Loic Le Marchand
Journal:  Cancer Res       Date:  2007-12-01       Impact factor: 12.701

9.  Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.

Authors:  Brent W Zanke; Celia M T Greenwood; Jagadish Rangrej; Rafal Kustra; Albert Tenesa; Susan M Farrington; James Prendergast; Sylviane Olschwang; Theodore Chiang; Edgar Crowdy; Vincent Ferretti; Philippe Laflamme; Saravanan Sundararajan; Stéphanie Roumy; Jean-François Olivier; Frédérick Robidoux; Robert Sladek; Alexandre Montpetit; Peter Campbell; Stephane Bezieau; Anne Marie O'Shea; George Zogopoulos; Michelle Cotterchio; Polly Newcomb; John McLaughlin; Ban Younghusband; Roger Green; Jane Green; Mary E M Porteous; Harry Campbell; Helene Blanche; Mourad Sahbatou; Emmanuel Tubacher; Catherine Bonaiti-Pellié; Bruno Buecher; Elio Riboli; Sebastien Kury; Stephen J Chanock; John Potter; Gilles Thomas; Steven Gallinger; Thomas J Hudson; Malcolm G Dunlop
Journal:  Nat Genet       Date:  2007-07-08       Impact factor: 38.330

10.  A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21.

Authors:  Ian Tomlinson; Emily Webb; Luis Carvajal-Carmona; Peter Broderick; Zoe Kemp; Sarah Spain; Steven Penegar; Ian Chandler; Maggie Gorman; Wendy Wood; Ella Barclay; Steven Lubbe; Lynn Martin; Gabrielle Sellick; Emma Jaeger; Richard Hubner; Ruth Wild; Andrew Rowan; Sarah Fielding; Kimberley Howarth; Andrew Silver; Wendy Atkin; Kenneth Muir; Richard Logan; David Kerr; Elaine Johnstone; Oliver Sieber; Richard Gray; Huw Thomas; Julian Peto; Jean-Baptiste Cazier; Richard Houlston
Journal:  Nat Genet       Date:  2007-07-08       Impact factor: 38.330

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  45 in total

1.  Association of 8q23-24 region (8q23.3 loci and 8q24.21 loci) with susceptibility to colorectal cancer: a systematic and updated meta-analysis.

Authors:  Linlin Li; Li Lv; Yuan Liang; Xiaoyu Shen; Shishi Zhou; Jia Zhu; Rui Ma
Journal:  Int J Clin Exp Med       Date:  2015-11-15

2.  Association of colorectal cancer susceptibility variants with esophageal cancer in a Chinese population.

Authors:  Ting-Ting Geng; Xiao-Jie Xun; Sen Li; Tian Feng; Li-Ping Wang; Tian-Bo Jin; Peng Hou
Journal:  World J Gastroenterol       Date:  2015-06-14       Impact factor: 5.742

3.  Characterization of the colorectal cancer-associated enhancer MYC-335 at 8q24: the role of rs67491583.

Authors:  Sari Tuupanen; Jian Yan; Mikko Turunen; Alexandra E Gylfe; Eevi Kaasinen; Li Li; Charis Eng; Daniel A Culver; Matthew F Kalady; Michael J Pennison; Boris Pasche; Upender Manne; Albert de la Chapelle; Heather Hampel; Brian E Henderson; Loic Le Marchand; Sampsa Hautaniemi; Hassan Askhtorab; Duane Smoot; Robert S Sandler; Temitope Keku; Sonia S Kupfer; Nathan A Ellis; Christopher A Haiman; Jussi Taipale; Lauri A Aaltonen
Journal:  Cancer Genet       Date:  2012 Jan-Feb

4.  Characterization of gene-environment interactions for colorectal cancer susceptibility loci.

Authors:  Carolyn M Hutter; Jenny Chang-Claude; Martha L Slattery; Bethann M Pflugeisen; Yi Lin; David Duggan; Hongmei Nan; Mathieu Lemire; Jagadish Rangrej; Jane C Figueiredo; Shuo Jiao; Tabitha A Harrison; Yan Liu; Lin S Chen; Deanna L Stelling; Greg S Warnick; Michael Hoffmeister; Sébastien Küry; Charles S Fuchs; Edward Giovannucci; Aditi Hazra; Peter Kraft; David J Hunter; Steven Gallinger; Brent W Zanke; Hermann Brenner; Bernd Frank; Jing Ma; Cornelia M Ulrich; Emily White; Polly A Newcomb; Charles Kooperberg; Andrea Z LaCroix; Ross L Prentice; Rebecca D Jackson; Robert E Schoen; Stephen J Chanock; Sonja I Berndt; Richard B Hayes; Bette J Caan; John D Potter; Li Hsu; Stéphane Bézieau; Andrew T Chan; Thomas J Hudson; Ulrike Peters
Journal:  Cancer Res       Date:  2012-02-24       Impact factor: 12.701

Review 5.  Characterization of the Hispanic or latino population in health research: a systematic review.

Authors:  Abraham Aragones; Susan L Hayes; Mei Hsuan Chen; Javier González; Francesca M Gany
Journal:  J Immigr Minor Health       Date:  2014-06

6.  Risk Prediction Models for Colorectal Cancer Incorporating Common Genetic Variants: A Systematic Review.

Authors:  Luke McGeoch; Catherine L Saunders; Simon J Griffin; Jon D Emery; Fiona M Walter; Deborah J Thompson; Antonis C Antoniou; Juliet A Usher-Smith
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-07-10       Impact factor: 4.254

7.  Association of genetic variants for colorectal cancer differs by subtypes of polyps in the colorectum.

Authors:  Ben Zhang; Martha J Shrubsole; Guoliang Li; Qiuyin Cai; Todd Edwards; Walter E Smalley; Reid M Ness; Wei Zheng
Journal:  Carcinogenesis       Date:  2012-10-01       Impact factor: 4.944

8.  Long-chain omega-3 polyunsaturated fatty acid intake and risk of colorectal cancer.

Authors:  Elizabeth D Kantor; Johanna W Lampe; Ulrike Peters; Thomas L Vaughan; Emily White
Journal:  Nutr Cancer       Date:  2013-09-20       Impact factor: 2.900

9.  Gene-environment interaction involving recently identified colorectal cancer susceptibility Loci.

Authors:  Elizabeth D Kantor; Carolyn M Hutter; Jessica Minnier; Sonja I Berndt; Hermann Brenner; Bette J Caan; Peter T Campbell; Christopher S Carlson; Graham Casey; Andrew T Chan; Jenny Chang-Claude; Stephen J Chanock; Michelle Cotterchio; Mengmeng Du; David Duggan; Charles S Fuchs; Edward L Giovannucci; Jian Gong; Tabitha A Harrison; Richard B Hayes; Brian E Henderson; Michael Hoffmeister; John L Hopper; Mark A Jenkins; Shuo Jiao; Laurence N Kolonel; Loic Le Marchand; Mathieu Lemire; Jing Ma; Polly A Newcomb; Heather M Ochs-Balcom; Bethann M Pflugeisen; John D Potter; Anja Rudolph; Robert E Schoen; Daniela Seminara; Martha L Slattery; Deanna L Stelling; Fridtjof Thomas; Mark Thornquist; Cornelia M Ulrich; Greg S Warnick; Brent W Zanke; Ulrike Peters; Li Hsu; Emily White
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-07-03       Impact factor: 4.254

10.  Genome-wide association study identifies possible genetic risk factors for colorectal adenomas.

Authors:  Todd L Edwards; Martha J Shrubsole; Qiuyin Cai; Guoliang Li; Qi Dai; Douglas K Rex; Thomas M Ulbright; Zhenming Fu; Ryan H Delahanty; Harvey J Murff; Walter Smalley; Reid M Ness; Wei Zheng
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2013-05-15       Impact factor: 4.254

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