Literature DB >> 24916657

Genetic code evolution started with the incorporation of glycine, followed by other small hydrophilic amino acids.

Harold S Bernhardt1, Wayne M Patrick.   

Abstract

We propose that glycine was the first amino acid to be incorporated into the genetic code, followed by serine, aspartic and/or glutamic acid-small hydrophilic amino acids that all have codons in the bottom right-hand corner of the standard genetic code table. Because primordial ribosomal synthesis is presumed to have been rudimentary, this stage would have been characterized by the synthesis of short, water-soluble peptides, the first of which would have comprised polyglycine. Evolution of the code is proposed to have occurred by the duplication and mutation of tRNA sequences, which produced a radiation of codon assignment outwards from the bottom right-hand corner. As a result of this expansion, we propose a trend from small hydrophilic to hydrophobic amino acids, with selection for longer polypeptides requiring a hydrophobic core for folding and stability driving the incorporation of hydrophobic amino acids into the code.

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Year:  2014        PMID: 24916657     DOI: 10.1007/s00239-014-9627-y

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  26 in total

1.  Testing a biosynthetic theory of the genetic code: fact or artifact?

Authors:  T A Ronneberg; L F Landweber; S J Freeland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Authors:  Harold Stephen Bernhardt; Warren Perry Tate
Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

3.  Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.

Authors:  Brian R Francis
Journal:  J Mol Evol       Date:  2013-06-07       Impact factor: 2.395

4.  The origin of the biologically coded amino acids.

Authors:  H James Cleaves
Journal:  J Theor Biol       Date:  2009-12-23       Impact factor: 2.691

5.  Evolution of a transfer RNA gene through a point mutation in the anticodon.

Authors:  M E Saks; J R Sampson; J Abelson
Journal:  Science       Date:  1998-03-13       Impact factor: 47.728

6.  An analysis of the metabolic theory of the origin of the genetic code.

Authors:  R Amirnovin
Journal:  J Mol Evol       Date:  1997-05       Impact factor: 2.395

7.  Genetic code development by stop codon takeover.

Authors:  N Lehman; T H Jukes
Journal:  J Theor Biol       Date:  1988-11-21       Impact factor: 2.691

8.  Transfer-RNA: the early adaptor.

Authors:  M Eigen; R Winkler-Oswatitsch
Journal:  Naturwissenschaften       Date:  1981-05

9.  A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code.

Authors:  Paul G Higgs
Journal:  Biol Direct       Date:  2009-04-24       Impact factor: 4.540

10.  An extension of the coevolution theory of the origin of the genetic code.

Authors:  Massimo Di Giulio
Journal:  Biol Direct       Date:  2008-09-05       Impact factor: 4.540

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  9 in total

1.  Evolution of the genetic code; Evidence from serine codon use disparity in Escherichia coli.

Authors:  Masayori Inouye; Risa Takino; Yojiro Ishida; Keiko Inouye
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

2.  Beyond the Frozen Accident: Glycine Assignment in the Genetic Code.

Authors:  Koji Tamura
Journal:  J Mol Evol       Date:  2015-08-20       Impact factor: 2.395

3.  Proline might have been the first amino acid in the primitive genetic code.

Authors:  Reina Komatsu; Risa Sawada; Takuya Umehara; Koji Tamura
Journal:  J Mol Evol       Date:  2014-06-28       Impact factor: 2.395

4.  Clues to tRNA Evolution from the Distribution of Class II tRNAs and Serine Codons in the Genetic Code.

Authors:  Harold S Bernhardt
Journal:  Life (Basel)       Date:  2016-02-24

5.  On the Uniqueness of the Standard Genetic Code.

Authors:  Gabriel S Zamudio; Marco V José
Journal:  Life (Basel)       Date:  2017-02-13

6.  Adaptive Properties of the Genetically Encoded Amino Acid Alphabet Are Inherited from Its Subsets.

Authors:  Melissa Ilardo; Rudrarup Bose; Markus Meringer; Bakhtiyor Rasulev; Natalie Grefenstette; James Stephenson; Stephen Freeland; Richard J Gillams; Christopher J Butch; H James Cleaves
Journal:  Sci Rep       Date:  2019-08-28       Impact factor: 4.379

Review 7.  A tRNA- and Anticodon-Centric View of the Evolution of Aminoacyl-tRNA Synthetases, tRNAomes, and the Genetic Code.

Authors:  Yunsoo Kim; Kristopher Opron; Zachary F Burton
Journal:  Life (Basel)       Date:  2019-05-04

Review 8.  Origins and Early Evolution of the tRNA Molecule.

Authors:  Koji Tamura
Journal:  Life (Basel)       Date:  2015-12-03

9.  Rooted tRNAomes and evolution of the genetic code.

Authors:  Daewoo Pak; Nan Du; Yunsoo Kim; Yanni Sun; Zachary F Burton
Journal:  Transcription       Date:  2018-02-06
  9 in total

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