Literature DB >> 26289730

Beyond the Frozen Accident: Glycine Assignment in the Genetic Code.

Koji Tamura1,2.   

Abstract

tRNA with a terminal UCCA-3' forms a structure in which the 3'-sequence folds back. The adenine of glycyl-AMP can base-pair with the uridine of the UCCA-3' region, which places the glycine residue in close proximity to the 3'-terminal adenosine of tRNA, possibly enabling the transfer of glycine from glycyl-AMP to tRNA. Thus, the UCCA-3'-containing tRNA (as seen in eubacterial tRNA(Gly)s) would possess an intrinsic property of glycylation by glycyl-AMP. This model provides a new perspective on the origins of the glycine assignment in the genetic code, beyond the "frozen accident" hypothesis.

Entities:  

Keywords:  CCA; Genetic code; Glycine; Origin; tRNA

Mesh:

Substances:

Year:  2015        PMID: 26289730     DOI: 10.1007/s00239-015-9694-8

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  32 in total

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Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

Review 2.  Nucleic-acid-templated synthesis as a model system for ancient translation.

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Authors:  P Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

4.  Amino acids as RNA ligands: a direct-RNA-template theory for the code's origin.

Authors:  M Yarus
Journal:  J Mol Evol       Date:  1998-07       Impact factor: 2.395

5.  Genetic code evolution started with the incorporation of glycine, followed by other small hydrophilic amino acids.

Authors:  Harold S Bernhardt; Wayne M Patrick
Journal:  J Mol Evol       Date:  2014-06-12       Impact factor: 2.395

6.  Recognition of tRNA(Gly) by three widely diverged glycyl-tRNA synthetases.

Authors:  N Nameki; K Tamura; H Asahara; T Hasegawa
Journal:  J Mol Biol       Date:  1997-05-09       Impact factor: 5.469

7.  Evidence for extraterrestrial amino-acids and hydrocarbons in the Murchison meteorite.

Authors:  K Kvenvolden; J Lawless; K Pering; E Peterson; J Flores; C Ponnamperuma; I R Kaplan; C Moore
Journal:  Nature       Date:  1970-12-05       Impact factor: 49.962

8.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

9.  Chiral selection in oligoadenylate formation in the presence of a metal ion catalyst or poly(U) template.

Authors:  Kazuomi Osawa; Hidehito Urata; Hiroaki Sawai
Journal:  Orig Life Evol Biosph       Date:  2005-06       Impact factor: 1.950

10.  The 3'-terminal end (NCCA) of tRNA determines the structure and stability of the aminoacyl acceptor stem.

Authors:  S Limmer; H P Hofmann; G Ott; M Sprinzl
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

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  6 in total

Review 1.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

2.  Binding Properties of Split tRNA to the C-terminal Domain of Methionyl-tRNA Synthetase of Nanoarchaeum equitans.

Authors:  Hidemichi Suzuki; Akihiro Kaneko; Taro Yamamoto; Mahoko Nambo; Ito Hirasawa; Takuya Umehara; Hisashi Yoshida; Sam-Yong Park; Koji Tamura
Journal:  J Mol Evol       Date:  2017-06-06       Impact factor: 2.395

3.  On the Uniqueness of the Standard Genetic Code.

Authors:  Gabriel S Zamudio; Marco V José
Journal:  Life (Basel)       Date:  2017-02-13

4.  Reciprocal Nucleopeptides as the Ancestral Darwinian Self-Replicator.

Authors:  Eleanor F Banwell; Bernard M A G Piette; Anne Taormina; Jonathan G Heddle
Journal:  Mol Biol Evol       Date:  2018-02-01       Impact factor: 16.240

5.  Origin of the Genetic Code Is Found at the Transition between a Thioester World of Peptides and the Phosphoester World of Polynucleotides.

Authors:  Hyman Hartman; Temple F Smith
Journal:  Life (Basel)       Date:  2019-08-22

Review 6.  Origins and Early Evolution of the tRNA Molecule.

Authors:  Koji Tamura
Journal:  Life (Basel)       Date:  2015-12-03
  6 in total

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