Literature DB >> 24903413

Computer-aided discovery of Trypanosoma brucei RNA-editing terminal uridylyl transferase 2 inhibitors.

Ozlem Demir1, Mehdi Labaied, Chris Merritt, Ken Stuart, Rommie E Amaro.   

Abstract

Human African trypanosomiasis (HAT) is a major health problem in sub-Saharan Africa caused by Trypanosoma brucei infection. Current HAT drugs are difficult to administer and not effective against all parasite species at different stages of the disease which indicates an unmet pharmaceutical need. TbRET2 is an indispensable enzyme for the parasite and is targeted here using a computational approach that combines molecular dynamics simulations and virtual screening. The compounds prioritized are then tested in T. brucei via Alamar blue cell viability assays. This work identified 20 drug-like compounds which are candidates for further testing in the drug discovery process.
© 2014 John Wiley & Sons A/S.

Entities:  

Keywords:  HAT; RET2; TUTase; Trypanosoma brucei; human African trypanosomiasis; sleeping sickness; trypanosomes; virtual screening

Mesh:

Substances:

Year:  2014        PMID: 24903413      PMCID: PMC4317284          DOI: 10.1111/cbdd.12302

Source DB:  PubMed          Journal:  Chem Biol Drug Des        ISSN: 1747-0277            Impact factor:   2.817


  35 in total

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Review 2.  Navigating chemical space for biology and medicine.

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3.  A family of poly(U) polymerases.

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4.  NECT trial: more than a small victory over sleeping sickness.

Authors:  Jimmy Opigo; Charles Woodrow
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5.  TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation.

Authors:  Inha Heo; Chirlmin Joo; Young-Kook Kim; Minju Ha; Mi-Jeong Yoon; Jun Cho; Kyu-Hyeon Yeom; Jinju Han; V Narry Kim
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

6.  Development of an Alamar Blue viability assay in 384-well format for high throughput whole cell screening of Trypanosoma brucei brucei bloodstream form strain 427.

Authors:  Melissa L Sykes; Vicky M Avery
Journal:  Am J Trop Med Hyg       Date:  2009-10       Impact factor: 2.345

7.  Working to overcome the global impact of neglected tropical diseases – Summary.

Authors: 
Journal:  Wkly Epidemiol Rec       Date:  2011-03-25

8.  Lead- and drug-like compounds: the rule-of-five revolution.

Authors:  Christopher A Lipinski
Journal:  Drug Discov Today Technol       Date:  2004-12

9.  Nifurtimox-eflornithine combination therapy for second-stage Trypanosoma brucei gambiense sleeping sickness: a randomized clinical trial in Congo.

Authors:  Gerardo Priotto; Serena Kasparian; Daniel Ngouama; Sara Ghorashian; Ute Arnold; Salah Ghabri; Unni Karunakara
Journal:  Clin Infect Dis       Date:  2007-10-22       Impact factor: 9.079

10.  Identification of compounds with anti-proliferative activity against Trypanosoma brucei brucei strain 427 by a whole cell viability based HTS campaign.

Authors:  Melissa L Sykes; Jonathan B Baell; Marcel Kaiser; Eric Chatelain; Sarah R Moawad; Danny Ganame; Jean-Robert Ioset; Vicky M Avery
Journal:  PLoS Negl Trop Dis       Date:  2012-11-29
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  5 in total

1.  Characterization of Trypanosoma cruzi Sirtuins as Possible Drug Targets for Chagas Disease.

Authors:  Nilmar Silvio Moretti; Leonardo da Silva Augusto; Tatiana Mordente Clemente; Raysa Paes Pinto Antunes; Nobuko Yoshida; Ana Claudia Torrecilhas; Maria Isabel Nogueira Cano; Sergio Schenkman
Journal:  Antimicrob Agents Chemother       Date:  2015-05-26       Impact factor: 5.191

2.  Enhancing Virtual Screening Performance of Protein Kinases with Molecular Dynamics Simulations.

Authors:  Tavina L Offutt; Robert V Swift; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2016-10-03       Impact factor: 4.956

3.  Charge reduction and thermodynamic stabilization of substrate RNAs inhibit RNA editing.

Authors:  W-Matthias Leeder; Andreas J Reuss; Michael Brecht; Katja Kratz; Josef Wachtveitl; H Ulrich Göringer
Journal:  PLoS One       Date:  2015-03-05       Impact factor: 3.240

4.  A Comparative Study of the Structural Dynamics of Four Terminal Uridylyl Transferases.

Authors:  Kevin J Cheng; Özlem Demir; Rommie E Amaro
Journal:  Genes (Basel)       Date:  2017-06-20       Impact factor: 4.096

5.  Knowledge-Based Methods To Train and Optimize Virtual Screening Ensembles.

Authors:  Robert V Swift; Siti A Jusoh; Tavina L Offutt; Eric S Li; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2016-05-03       Impact factor: 4.956

  5 in total

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