Literature DB >> 24896123

High-density 3D single molecular analysis based on compressed sensing.

Lusheng Gu1, Yi Sheng1, Yan Chen2, Hao Chang3, Yongdeng Zhang2, Pingping Lv2, Wei Ji4, Tao Xu5.   

Abstract

Single molecule fitting-based superresolution microscopy achieves sub-diffraction-limit image resolution but suffers from a need for long acquisition times to gather enough molecules. Several methods have recently been developed that analyze high molecule density images but most are only applicable to two dimensions. In this study, we implemented a high-density superresolution localization algorithm based on compressed sensing and a biplane approach that provides three-dimensional information about molecules, achieving super-resolution imaging at higher molecule densities than those achieved using the conventional single molecule fitting method.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2014        PMID: 24896123      PMCID: PMC4052265          DOI: 10.1016/j.bpj.2014.04.021

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  High-density localization of active molecules using Structured Sparse Model and Bayesian Information Criterion.

Authors:  Tingwei Quan; Hongyu Zhu; Xiaomao Liu; Yongfeng Liu; Jiuping Ding; Shaoqun Zeng; Zhen-Li Huang
Journal:  Opt Express       Date:  2011-08-29       Impact factor: 3.894

Review 2.  Far-field optical nanoscopy.

Authors:  Stefan W Hell
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

3.  Using total-variation regularization for intensity modulated radiation therapy inverse planning with field-specific numbers of segments.

Authors:  Lei Zhu; Louis Lee; Yunzhi Ma; Yinyu Ye; Rafe Mazzeo; Lei Xing
Journal:  Phys Med Biol       Date:  2008-11-07       Impact factor: 3.609

4.  Rational design of true monomeric and bright photoactivatable fluorescent proteins.

Authors:  Mingshu Zhang; Hao Chang; Yongdeng Zhang; Junwei Yu; Lijie Wu; Wei Ji; Juanjuan Chen; Bei Liu; Jingze Lu; Yingfang Liu; Junlong Zhang; Pingyong Xu; Tao Xu
Journal:  Nat Methods       Date:  2012-05-13       Impact factor: 28.547

5.  Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples.

Authors:  Manuel F Juette; Travis J Gould; Mark D Lessard; Michael J Mlodzianoski; Bhupendra S Nagpure; Brian T Bennett; Samuel T Hess; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2008-05-11       Impact factor: 28.547

6.  DAOSTORM: an algorithm for high- density super-resolution microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2011-04       Impact factor: 28.547

7.  A high-density 3D localization algorithm for stochastic optical reconstruction microscopy.

Authors:  Hazen Babcock; Yaron M Sigal; Xiaowei Zhuang
Journal:  Opt Nanoscopy       Date:  2012

8.  Breaking the diffraction barrier: super-resolution imaging of cells.

Authors:  Bo Huang; Hazen Babcock; Xiaowei Zhuang
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

9.  Faster STORM using compressed sensing.

Authors:  Lei Zhu; Wei Zhang; Daniel Elnatan; Bo Huang
Journal:  Nat Methods       Date:  2012-04-22       Impact factor: 28.547

10.  Fast, three-dimensional super-resolution imaging of live cells.

Authors:  Sara A Jones; Sang-Hee Shim; Jiang He; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2011-05-08       Impact factor: 28.547

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  6 in total

1.  3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction.

Authors:  Junhong Min; Seamus J Holden; Lina Carlini; Michael Unser; Suliana Manley; Jong Chul Ye
Journal:  Biomed Opt Express       Date:  2014-10-14       Impact factor: 3.732

2.  3D multifocus astigmatism and compressed sensing (3D MACS) based superresolution reconstruction.

Authors:  Jiaqing Huang; Mingzhai Sun; Kristyn Gumpper; Yuejie Chi; Jianjie Ma
Journal:  Biomed Opt Express       Date:  2015-02-23       Impact factor: 3.732

3.  Whole-cell, multicolor superresolution imaging using volumetric multifocus microscopy.

Authors:  Bassam Hajj; Jan Wisniewski; Mohamed El Beheiry; Jiji Chen; Andrey Revyakin; Carl Wu; Maxime Dahan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

4.  Reconstruction of super-resolution STORM images using compressed sensing based on low-resolution raw images and interpolation.

Authors:  Tao Cheng; Danni Chen; Bin Yu; Hanben Niu
Journal:  Biomed Opt Express       Date:  2017-04-10       Impact factor: 3.732

5.  Optical tracking of nanoscale particles in microscale environments.

Authors:  P P Mathai; J A Liddle; S M Stavis
Journal:  Appl Phys Rev       Date:  2016-03-10       Impact factor: 19.162

Review 6.  Super-resolution Microscopy for Biological Imaging.

Authors:  Zhigang Yang; Soham Samanta; Wei Yan; Bin Yu; Junle Qu
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

  6 in total

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