Literature DB >> 28663883

Reconstruction of super-resolution STORM images using compressed sensing based on low-resolution raw images and interpolation.

Tao Cheng1,2,3, Danni Chen1,3, Bin Yu1,3, Hanben Niu1,3,4.   

Abstract

Single-molecule-localization-based super-resolution microscopic technologies, such as stochastic optical reconstruction microscopy (STORM), require lengthy runtimes. Compressed sensing (CS) can partially overcome this inherent disadvantage, but its effect on super-resolution reconstruction has not been thoroughly examined. In CS, measurement matrices play more important roles than reconstruction algorithms. Larger measurement matrices have better restricted isometry properties (RIPs). This paper proposes, analyzes, and compares uses of higher resolution cameras and interpolation to achieve better outcomes. Statistical results demonstrate that super-resolution reconstructions is significantly improved by interpolating low-resolution STORM raw images and using point-spread-function-based measurement matrices with better RIPs. The analysis of publically accessible experimental data confirms this conclusion.

Entities:  

Keywords:  (100.3010) Image reconstruction techniques; (100.6640) Superresolution; (170.2520) Fluorescence microscopy

Year:  2017        PMID: 28663883      PMCID: PMC5480490          DOI: 10.1364/BOE.8.002445

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  20 in total

1.  Saturated patterned excitation microscopy--a concept for optical resolution improvement.

Authors:  Rainer Heintzmann; Thomas M Jovin; Christoph Cremer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2002-08       Impact factor: 2.129

2.  Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules.

Authors:  Dylan T Burnette; Prabuddha Sengupta; Yuhai Dai; Jennifer Lippincott-Schwartz; Bechara Kachar
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

3.  High-density localization of active molecules using Structured Sparse Model and Bayesian Information Criterion.

Authors:  Tingwei Quan; Hongyu Zhu; Xiaomao Liu; Yongfeng Liu; Jiuping Ding; Shaoqun Zeng; Zhen-Li Huang
Journal:  Opt Express       Date:  2011-08-29       Impact factor: 3.894

4.  3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction.

Authors:  Junhong Min; Seamus J Holden; Lina Carlini; Michael Unser; Suliana Manley; Jong Chul Ye
Journal:  Biomed Opt Express       Date:  2014-10-14       Impact factor: 3.732

5.  Learning to sense sparse signals: simultaneous sensing matrix and sparsifying dictionary optimization.

Authors:  Julio Martin Duarte-Carvajalino; Guillermo Sapiro
Journal:  IEEE Trans Image Process       Date:  2009-06-02       Impact factor: 10.856

6.  DAOSTORM: an algorithm for high- density super-resolution microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2011-04       Impact factor: 28.547

7.  High density 3D localization microscopy using sparse support recovery.

Authors:  Martin Ovesný; Pavel Křížek; Zdeněk Švindrych; Guy M Hagen
Journal:  Opt Express       Date:  2014-12-15       Impact factor: 3.894

8.  Fast compressed sensing analysis for super-resolution imaging using L1-homotopy.

Authors:  Hazen P Babcock; Jeffrey R Moffitt; Yunlong Cao; Xiaowei Zhuang
Journal:  Opt Express       Date:  2013-11-18       Impact factor: 3.894

9.  High-density 3D single molecular analysis based on compressed sensing.

Authors:  Lusheng Gu; Yi Sheng; Yan Chen; Hao Chang; Yongdeng Zhang; Pingping Lv; Wei Ji; Tao Xu
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

10.  FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data.

Authors:  Junhong Min; Cédric Vonesch; Hagai Kirshner; Lina Carlini; Nicolas Olivier; Seamus Holden; Suliana Manley; Jong Chul Ye; Michael Unser
Journal:  Sci Rep       Date:  2014-04-03       Impact factor: 4.379

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  1 in total

Review 1.  Super-Resolution Imaging with Graphene.

Authors:  Xiaoxiao Jiang; Lu Kong; Yu Ying; Qiongchan Gu; Jiangtao Lv; Zhigao Dai; Guangyuan Si
Journal:  Biosensors (Basel)       Date:  2021-08-30
  1 in total

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