Literature DB >> 22522657

Faster STORM using compressed sensing.

Lei Zhu1, Wei Zhang, Daniel Elnatan, Bo Huang.   

Abstract

In super-resolution microscopy methods based on single-molecule switching, the rate of accumulating single-molecule activation events often limits the time resolution. Here we developed a sparse-signal recovery technique using compressed sensing to analyze images with highly overlapping fluorescent spots. This method allows an activated fluorophore density an order of magnitude higher than what conventional single-molecule fitting methods can handle. Using this method, we demonstrated imaging microtubule dynamics in living cells with a time resolution of 3 s.

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Year:  2012        PMID: 22522657      PMCID: PMC3477591          DOI: 10.1038/nmeth.1978

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  17 in total

1.  High-density localization of active molecules using Structured Sparse Model and Bayesian Information Criterion.

Authors:  Tingwei Quan; Hongyu Zhu; Xiaomao Liu; Yongfeng Liu; Jiuping Ding; Shaoqun Zeng; Zhen-Li Huang
Journal:  Opt Express       Date:  2011-08-29       Impact factor: 3.894

2.  Microscopy and its focal switch.

Authors:  Stefan W Hell
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

3.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

4.  Using total-variation regularization for intensity modulated radiation therapy inverse planning with field-specific numbers of segments.

Authors:  Lei Zhu; Louis Lee; Yunzhi Ma; Yinyu Ye; Rafe Mazzeo; Lei Xing
Journal:  Phys Med Biol       Date:  2008-11-07       Impact factor: 3.609

5.  Search for IMRT inverse plans with piecewise constant fluence maps using compressed sensing techniques.

Authors:  Lei Zhu; Lei Xing
Journal:  Med Phys       Date:  2009-05       Impact factor: 4.071

6.  DAOSTORM: an algorithm for high- density super-resolution microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2011-04       Impact factor: 28.547

7.  Breaking the diffraction barrier: super-resolution imaging of cells.

Authors:  Bo Huang; Hazen Babcock; Xiaowei Zhuang
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

8.  Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.

Authors:  Fang Huang; Samantha L Schwartz; Jason M Byars; Keith A Lidke
Journal:  Biomed Opt Express       Date:  2011-04-29       Impact factor: 3.732

9.  Fast, three-dimensional super-resolution imaging of live cells.

Authors:  Sara A Jones; Sang-Hee Shim; Jiang He; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2011-05-08       Impact factor: 28.547

10.  Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution.

Authors:  Bo Huang; Sara A Jones; Boerries Brandenburg; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2008-11-23       Impact factor: 28.547

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  107 in total

1.  Faster and more versatile tools for super-resolution fluorescence microscopy.

Authors:  Alex Small
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

2.  3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction.

Authors:  Junhong Min; Seamus J Holden; Lina Carlini; Michael Unser; Suliana Manley; Jong Chul Ye
Journal:  Biomed Opt Express       Date:  2014-10-14       Impact factor: 3.732

3.  Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair.

Authors:  Yi Liao; Jeremy W Schroeder; Burke Gao; Lyle A Simmons; Julie S Biteen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

4.  Application of compressed sensing to the simulation of atomic systems.

Authors:  Xavier Andrade; Jacob N Sanders; Alán Aspuru-Guzik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

Review 5.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

6.  Quantitative evaluation of software packages for single-molecule localization microscopy.

Authors:  Daniel Sage; Hagai Kirshner; Thomas Pengo; Nico Stuurman; Junhong Min; Suliana Manley; Michael Unser
Journal:  Nat Methods       Date:  2015-06-15       Impact factor: 28.547

Review 7.  Super-resolution microscopy approaches for live cell imaging.

Authors:  Antoine G Godin; Brahim Lounis; Laurent Cognet
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

8.  Artifacts in single-molecule localization microscopy.

Authors:  Anne Burgert; Sebastian Letschert; Sören Doose; Markus Sauer
Journal:  Histochem Cell Biol       Date:  2015-07-03       Impact factor: 4.304

Review 9.  Faster fluorescence microscopy: advances in high speed biological imaging.

Authors:  Peter W Winter; Hari Shroff
Journal:  Curr Opin Chem Biol       Date:  2014-05-09       Impact factor: 8.822

10.  3D super-resolution imaging with blinking quantum dots.

Authors:  Yong Wang; Gilbert Fruhwirth; En Cai; Tony Ng; Paul R Selvin
Journal:  Nano Lett       Date:  2013-10-10       Impact factor: 11.189

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