Literature DB >> 21935056

High-density localization of active molecules using Structured Sparse Model and Bayesian Information Criterion.

Tingwei Quan1, Hongyu Zhu, Xiaomao Liu, Yongfeng Liu, Jiuping Ding, Shaoqun Zeng, Zhen-Li Huang.   

Abstract

Localization-based super-resolution microscopy (or called localization microscopy) rely on repeated imaging and localization of active molecules, and the spatial resolution enhancement of localization microscopy is built upon the sacrifice of its temporal resolution. Developing algorithms for high-density localization of active molecules is a promising approach to increase the speed of localization microscopy. Here we present a new algorithm called SSM_BIC for such purpose. The SSM_BIC combines the advantages of the Structured Sparse Model (SSM) and the Bayesian Information Criterion (BIC). Through simulation and experimental studies, we evaluate systematically the performance between the SSM_BIC and the conventional Sparse algorithm in high-density localization of active molecules. We show that the SSM_BIC is superior in processing single molecule images with weak signal embedded in strong background.

Mesh:

Year:  2011        PMID: 21935056     DOI: 10.1364/OE.19.016963

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  26 in total

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Journal:  Biomed Opt Express       Date:  2015-02-23       Impact factor: 3.732

4.  State space approach to single molecule localization in fluorescence microscopy.

Authors:  Milad R Vahid; Jerry Chao; Dongyoung Kim; E Sally Ward; Raimund J Ober
Journal:  Biomed Opt Express       Date:  2017-02-06       Impact factor: 3.732

5.  Reconstruction of super-resolution STORM images using compressed sensing based on low-resolution raw images and interpolation.

Authors:  Tao Cheng; Danni Chen; Bin Yu; Hanben Niu
Journal:  Biomed Opt Express       Date:  2017-04-10       Impact factor: 3.732

Review 6.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

7.  Fast compressed sensing analysis for super-resolution imaging using L1-homotopy.

Authors:  Hazen P Babcock; Jeffrey R Moffitt; Yunlong Cao; Xiaowei Zhuang
Journal:  Opt Express       Date:  2013-11-18       Impact factor: 3.894

Review 8.  Fluorescence nanoscopy. Methods and applications.

Authors:  Jose Requejo-Isidro
Journal:  J Chem Biol       Date:  2013-06-04

9.  Superresolution microscope image reconstruction by spatiotemporal object decomposition and association: application in resolving t-tubule structure in skeletal muscle.

Authors:  Mingzhai Sun; Jiaqing Huang; Filiz Bunyak; Kristyn Gumpper; Gejing De; Matthew Sermersheim; George Liu; Pei-Hui Lin; Kannappan Palaniappan; Jianjie Ma
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

10.  A multiemitter localization comparison of 3D superresolution imaging modalities.

Authors:  Sheng Liu; Keith A Lidke
Journal:  Chemphyschem       Date:  2013-11-26       Impact factor: 3.102

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