Literature DB >> 22581370

Rational design of true monomeric and bright photoactivatable fluorescent proteins.

Mingshu Zhang1, Hao Chang, Yongdeng Zhang, Junwei Yu, Lijie Wu, Wei Ji, Juanjuan Chen, Bei Liu, Jingze Lu, Yingfang Liu, Junlong Zhang, Pingyong Xu, Tao Xu.   

Abstract

Monomeric (m)Eos2 is an engineered photoactivatable fluorescent protein widely used for super-resolution microscopy. We show that mEos2 forms oligomers at high concentrations and forms aggregates when labeling membrane proteins, limiting its application as a fusion partner. We solved the crystal structure of tetrameric mEos2 and rationally designed improved versions, mEos3.1 and mEos3.2, that are truly monomeric, are brighter, mature faster and exhibit higher photon budget and label density.

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Year:  2012        PMID: 22581370     DOI: 10.1038/nmeth.2021

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  28 in total

1.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

2.  A photoactivatable marker protein for pulse-chase imaging with superresolution.

Authors:  Jochen Fuchs; Susan Böhme; Franz Oswald; Per Niklas Hedde; Maike Krause; Jörg Wiedenmann; G Ulrich Nienhaus
Journal:  Nat Methods       Date:  2010-07-04       Impact factor: 28.547

3.  Aggregation of STIM1 underneath the plasma membrane induces clustering of Orai1.

Authors:  Pingyong Xu; Jingze Lu; Zhengzheng Li; Xiaoqing Yu; Liangyi Chen; Tao Xu
Journal:  Biochem Biophys Res Commun       Date:  2006-10-04       Impact factor: 3.575

4.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

5.  Identification of clustering artifacts in photoactivated localization microscopy.

Authors:  Paolo Annibale; Stefano Vanni; Marco Scarselli; Ursula Rothlisberger; Aleksandra Radenovic
Journal:  Nat Methods       Date:  2011-06-12       Impact factor: 28.547

6.  Diffraction-unlimited all-optical imaging and writing with a photochromic GFP.

Authors:  Tim Grotjohann; Ilaria Testa; Marcel Leutenegger; Hannes Bock; Nicolai T Urban; Flavie Lavoie-Cardinal; Katrin I Willig; Christian Eggeling; Stefan Jakobs; Stefan W Hell
Journal:  Nature       Date:  2011-09-11       Impact factor: 49.962

7.  Dissecting multiple steps of GLUT4 trafficking and identifying the sites of insulin action.

Authors:  Li Bai; Yan Wang; Junmei Fan; Yu Chen; Wei Ji; Anlian Qu; Pingyong Xu; David E James; Tao Xu
Journal:  Cell Metab       Date:  2007-01       Impact factor: 27.287

8.  A photoswitchable orange-to-far-red fluorescent protein, PSmOrange.

Authors:  Oksana M Subach; George H Patterson; Li-Min Ting; Yarong Wang; John S Condeelis; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2011-07-31       Impact factor: 28.547

9.  Fast, three-dimensional super-resolution imaging of live cells.

Authors:  Sara A Jones; Sang-Hee Shim; Jiang He; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2011-05-08       Impact factor: 28.547

10.  A bright and photostable photoconvertible fluorescent protein.

Authors:  Sean A McKinney; Christopher S Murphy; Kristin L Hazelwood; Michael W Davidson; Loren L Looger
Journal:  Nat Methods       Date:  2009-01-25       Impact factor: 28.547

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  195 in total

1.  Amyotrophic lateral sclerosis-linked mutations increase the viscosity of liquid-like TDP-43 RNP granules in neurons.

Authors:  Pallavi P Gopal; Jeffrey J Nirschl; Eva Klinman; Erika L F Holzbaur
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Chromophore reduction plus reversible photobleaching: how the mKate2 "photoconversion" works.

Authors:  Elena A Protasova; Alexander S Mishin; Konstantin A Lukyanov; Eugene G Maksimov; Alexey M Bogdanov
Journal:  Photochem Photobiol Sci       Date:  2021-06-04       Impact factor: 3.982

3.  Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate.

Authors:  Nela Durisic; Lara Laparra-Cuervo; Angel Sandoval-Álvarez; Joseph Steven Borbely; Melike Lakadamyali
Journal:  Nat Methods       Date:  2014-01-05       Impact factor: 28.547

Review 4.  Seeing the forest tree by tree: super-resolution light microscopy meets the neurosciences.

Authors:  Marta Maglione; Stephan J Sigrist
Journal:  Nat Neurosci       Date:  2013-06-25       Impact factor: 24.884

5.  Ultrafast, accurate, and robust localization of anisotropic dipoles.

Authors:  Yongdeng Zhang; Lusheng Gu; Hao Chang; Wei Ji; Yan Chen; Mingshu Zhang; Lu Yang; Bei Liu; Liangyi Chen; Tao Xu
Journal:  Protein Cell       Date:  2013-06-07       Impact factor: 14.870

6.  Light-induced protein translocation by genetically encoded unnatural amino acid in Caenorhabditis elegans.

Authors:  Hao Chang; Mei Han; Wenming Huang; Guifeng Wei; Juanjuan Chen; Peng R Chen; Runsheng Chen; Junlong Zhang; Tao Xu; Pingyong Xu
Journal:  Protein Cell       Date:  2013-12       Impact factor: 14.870

Review 7.  Chromophore chemistry of fluorescent proteins controlled by light.

Authors:  Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Chem Biol       Date:  2014-05-13       Impact factor: 8.822

8.  The V4 and V5 Variable Loops of HIV-1 Envelope Glycoprotein Are Tolerant to Insertion of Green Fluorescent Protein and Are Useful Targets for Labeling.

Authors:  Shuhei Nakane; Aikichi Iwamoto; Zene Matsuda
Journal:  J Biol Chem       Date:  2015-04-24       Impact factor: 5.157

9.  Metal-induced sensor mobilization turns on affinity to activate regulator for metal detoxification in live bacteria.

Authors:  Bing Fu; Kushal Sengupta; Lauren A Genova; Ace George Santiago; Won Jung; Łukasz Krzemiński; Udit Kumar Chakraborty; Wenyao Zhang; Peng Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-28       Impact factor: 11.205

10.  Single-molecule dynamics of the molecular chaperone trigger factor in living cells.

Authors:  Feng Yang; Tai-Yen Chen; Łukasz Krzemiński; Ace George Santiago; Won Jung; Peng Chen
Journal:  Mol Microbiol       Date:  2016-09-30       Impact factor: 3.501

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