Literature DB >> 24878340

Loading strategies of ring-shaped nucleic acid translocases and helicases.

Valerie L O'Shea1, James M Berger2.   

Abstract

Ring-shaped nucleic acid translocases and helicases catalyze the directed and processive movement of nucleic acid strands to support essential transactions such as replication, transcription, and chromosome partitioning. Assembled typically as hexamers, ring helicase/translocase systems use coordinated cycles of nucleoside triphosphate (NTP) hydrolysis to translocate extended DNA or RNA substrates through a central pore. Ring formation presents a topological challenge to the engagement of substrate oligonucleotides, and is frequently overcome by distinct loading strategies for shepherding specific motors onto their respective substrates. Recent structural studies that capture different loading intermediates have begun to reveal how different helicase/translocase rings either assemble around substrates or crack open to allow DNA or RNA strand entry, and how dedicated chaperones facilitate these events in some instances. Both prevailing mechanistic models and remaining knowledge gaps are discussed.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24878340      PMCID: PMC4040187          DOI: 10.1016/j.sbi.2013.11.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  90 in total

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Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

Review 2.  Activation of the replicative DNA helicase: breaking up is hard to do.

Authors:  Dominik Boos; Jordi Frigola; John F X Diffley
Journal:  Curr Opin Cell Biol       Date:  2012-03-16       Impact factor: 8.382

3.  ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote.

Authors:  Artem Y Lyubimov; Alessandro Costa; Franziska Bleichert; Michael R Botchan; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

4.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

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Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

Review 5.  The FtsK Family of DNA Pumps.

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Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

Review 6.  Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies.

Authors:  Andrew Robinson; Antoine M van Oijen
Journal:  Nat Rev Microbiol       Date:  2013-04-03       Impact factor: 60.633

7.  The bacterial DnaC helicase loader is a DnaB ring breaker.

Authors:  Ernesto Arias-Palomo; Valerie L O'Shea; Iris V Hood; James M Berger
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8.  The hexameric helicase DnaB adopts a nonplanar conformation during translocation.

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9.  Clamp loader ATPases and the evolution of DNA replication machinery.

Authors:  Brian A Kelch; Debora L Makino; Mike O'Donnell; John Kuriyan
Journal:  BMC Biol       Date:  2012-04-20       Impact factor: 7.431

10.  Bypass of a protein barrier by a replicative DNA helicase.

Authors:  Hasan Yardimci; Xindan Wang; Anna B Loveland; Inger Tappin; David Z Rudner; Jerard Hurwitz; Antoine M van Oijen; Johannes C Walter
Journal:  Nature       Date:  2012-11-28       Impact factor: 49.962

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  18 in total

1.  Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.

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Journal:  Cell       Date:  2019-07-25       Impact factor: 41.582

2.  Ligand-induced and small-molecule control of substrate loading in a hexameric helicase.

Authors:  Michael R Lawson; Kevin Dyer; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

3.  Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.

Authors:  Nathan D Thomsen; Michael R Lawson; Lea B Witkowsky; Song Qu; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

Review 4.  Replication Initiation in Bacteria.

Authors:  S Chodavarapu; J M Kaguni
Journal:  Enzymes       Date:  2016-04-20

Review 5.  Assessing heterogeneity in oligomeric AAA+ machines.

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Journal:  Cell Mol Life Sci       Date:  2016-09-26       Impact factor: 9.261

6.  Mechanisms of opening and closing of the bacterial replicative helicase.

Authors:  Jillian Chase; Andrew Catalano; Alex J Noble; Edward T Eng; Paul Db Olinares; Kelly Molloy; Danaya Pakotiprapha; Martin Samuels; Brian Chait; Amedee des Georges; David Jeruzalmi
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7.  Deregulated expression of Cdc6 in the skin facilitates papilloma formation and affects the hair growth cycle.

Authors:  Sabela Búa; Peggy Sotiropoulou; Cecilia Sgarlata; Luis R Borlado; Manuel Eguren; Orlando Domínguez; Sagrario Ortega; Marcos Malumbres; Cedric Blanpain; Juan Méndez
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

8.  Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.

Authors:  Ernesto Arias-Palomo; Neha Puri; Valerie L O'Shea Murray; Qianyun Yan; James M Berger
Journal:  Mol Cell       Date:  2019-02-20       Impact factor: 17.970

Review 9.  Determining translocation orientations of nucleic acid helicases.

Authors:  Himasha M Perera; Michael A Trakselis
Journal:  Methods       Date:  2021-11-07       Impact factor: 4.647

10.  Single-molecule level structural dynamics of DNA unwinding by human mitochondrial Twinkle helicase.

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