Literature DB >> 22778422

ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote.

Artem Y Lyubimov1, Alessandro Costa, Franziska Bleichert, Michael R Botchan, James M Berger.   

Abstract

The heterohexameric minichromosome maintenance (MCM2-7) complex is an ATPase that serves as the central replicative helicase in eukaryotes. During initiation, the ring-shaped MCM2-7 particle is thought to open to facilitate loading onto DNA. The conformational state accessed during ring opening, the interplay between ATP binding and MCM2-7 architecture, and the use of these events in the regulation of DNA unwinding are poorly understood. To address these issues in isolation from the regulatory complexity of existing eukaryotic model systems, we investigated the structure/function relationships of a naturally minimized MCM2-7 complex from the microsporidian parasite Encephalitozoon cuniculi. Electron microscopy and small-angle X-ray scattering studies show that, in the absence of ATP, MCM2-7 spontaneously adopts a left-handed, open-ring structure. Nucleotide binding does not promote ring closure but does cause the particle to constrict in a two-step process that correlates with the filling of high- and low-affinity ATPase sites. Our findings support the idea that an open ring forms the default conformational state of the isolated MCM2-7 complex, and they provide a structural framework for understanding the multiphasic ATPase kinetics observed in different MCM2-7 systems.

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Year:  2012        PMID: 22778422      PMCID: PMC3409790          DOI: 10.1073/pnas.1209406109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Use of a real-time, coupled assay to measure the ATPase activity of DNA topoisomerase II.

Authors:  J E Lindsley
Journal:  Methods Mol Biol       Date:  2001

2.  Interactions between two catalytically distinct MCM subgroups are essential for coordinated ATP hydrolysis and DNA replication.

Authors:  A Schwacha; S P Bell
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

Review 3.  The nuts and bolts of ring-translocase structure and mechanism.

Authors:  Artem Y Lyubimov; Melania Strycharska; James M Berger
Journal:  Curr Opin Struct Biol       Date:  2011-02-01       Impact factor: 6.809

4.  Mechanistic analysis of local ori melting and helicase assembly by the papillomavirus E1 protein.

Authors:  Stephen Schuck; Arne Stenlund
Journal:  Mol Cell       Date:  2011-09-02       Impact factor: 17.970

5.  Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.

Authors:  M D Katinka; S Duprat; E Cornillot; G Méténier; F Thomarat; G Prensier; V Barbe; E Peyretaillade; P Brottier; P Wincker; F Delbac; H El Alaoui; P Peyret; W Saurin; M Gouy; J Weissenbach; C P Vivarès
Journal:  Nature       Date:  2001-11-22       Impact factor: 49.962

6.  Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins.

Authors:  Ivar Ilves; Tatjana Petojevic; James J Pesavento; Michael R Botchan
Journal:  Mol Cell       Date:  2010-01-29       Impact factor: 17.970

7.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

8.  The Saccharomyces cerevisiae Mcm6/2 and Mcm5/3 ATPase active sites contribute to the function of the putative Mcm2-7 'gate'.

Authors:  Matthew L Bochman; Anthony Schwacha
Journal:  Nucleic Acids Res       Date:  2010-05-19       Impact factor: 16.971

9.  Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing.

Authors:  Dirk Remus; Fabienne Beuron; Gökhan Tolun; Jack D Griffith; Edward P Morris; John F X Diffley
Journal:  Cell       Date:  2009-11-05       Impact factor: 41.582

10.  Mec1 is one of multiple kinases that prime the Mcm2-7 helicase for phosphorylation by Cdc7.

Authors:  John C W Randell; Andy Fan; Clara Chan; Laura I Francis; Ryan C Heller; Kyriaki Galani; Stephen P Bell
Journal:  Mol Cell       Date:  2010-11-12       Impact factor: 17.970

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  45 in total

1.  Prereplication-complex formation: a molecular double take?

Authors:  Hasan Yardimci; Johannes C Walter
Journal:  Nat Struct Mol Biol       Date:  2014-01       Impact factor: 15.369

2.  Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104.

Authors:  Stephanie N Gates; Adam L Yokom; JiaBei Lin; Meredith E Jackrel; Alexandrea N Rizo; Nathan M Kendsersky; Courtney E Buell; Elizabeth A Sweeny; Korrie L Mack; Edward Chuang; Mariana P Torrente; Min Su; James Shorter; Daniel R Southworth
Journal:  Science       Date:  2017-06-15       Impact factor: 47.728

Review 3.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

4.  Transient association of MCM complex proteins with the nuclear matrix during initiation of mammalian DNA replication.

Authors:  Emma L Hesketh; John R P Knight; Rosemary H C Wilson; James P J Chong; Dawn Coverley
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 5.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

6.  Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.

Authors:  Nathan D Thomsen; Michael R Lawson; Lea B Witkowsky; Song Qu; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

7.  Cdc45 (cell division cycle protein 45) guards the gate of the Eukaryote Replisome helicase stabilizing leading strand engagement.

Authors:  Tatjana Petojevic; James J Pesavento; Alessandro Costa; Jingdan Liang; Zhijun Wang; James M Berger; Michael R Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

Review 8.  DNA replication and homologous recombination factors: acting together to maintain genome stability.

Authors:  Antoine Aze; Jin Chuan Zhou; Alessandro Costa; Vincenzo Costanzo
Journal:  Chromosoma       Date:  2013-04-16       Impact factor: 4.316

9.  Molecular architecture of the recombinant human MCM2-7 helicase in complex with nucleotides and DNA.

Authors:  Jasminka Boskovic; Elisabeth Bragado-Nilsson; Bhargrav Saligram Prabhakar; Igor Yefimenko; Jaime Martínez-Gago; Sergio Muñoz; Juan Méndez; Guillermo Montoya
Journal:  Cell Cycle       Date:  2016-06-01       Impact factor: 4.534

10.  Structure and mechanism of the phage T4 recombination mediator protein UvsY.

Authors:  Stefan Gajewski; Michael Brett Waddell; Sivaraja Vaithiyalingam; Amanda Nourse; Zhenmei Li; Nils Woetzel; Nathan Alexander; Jens Meiler; Stephen W White
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

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