Literature DB >> 23562643

The bacterial DnaC helicase loader is a DnaB ring breaker.

Ernesto Arias-Palomo1, Valerie L O'Shea, Iris V Hood, James M Berger.   

Abstract

Dedicated AAA+ ATPases deposit hexameric ring-shaped helicases onto DNA to promote replication in cellular organisms. To understand how loading occurs, we used electron microscopy and small angle X-ray scattering (SAXS) to determine the ATP-bound structure of the intact E. coli DnaB⋅DnaC helicase/loader complex. The 480 kDa dodecamer forms a three-tiered assembly, in which DnaC adopts a spiral configuration that remodels N-terminal scaffolding and C-terminal motor regions of DnaB to produce a clear break in the helicase ring. Surprisingly, DnaC's AAA+ fold is dispensable for ring remodeling because the DnaC isolated helicase-binding domain can both load DnaB onto DNA and increase the efficiency by which the helicase acts on substrates in vitro. Our data demonstrate that DnaC opens DnaB by a mechanism akin to that of polymerase clamp loaders and indicate that bacterial replicative helicases, like their eukaryotic counterparts, possess autoregulatory elements that influence how hexameric motor domains are loaded onto and unwind DNA.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23562643      PMCID: PMC3670212          DOI: 10.1016/j.cell.2013.03.006

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  79 in total

1.  A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication.

Authors:  Cecile Evrin; Pippa Clarke; Juergen Zech; Rudi Lurz; Jingchuan Sun; Stefan Uhle; Huilin Li; Bruce Stillman; Christian Speck
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-12       Impact factor: 11.205

Review 2.  Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

Authors:  Tsutomu Katayama; Shogo Ozaki; Kenji Keyamura; Kazuyuki Fujimitsu
Journal:  Nat Rev Microbiol       Date:  2010-03       Impact factor: 60.633

Review 3.  Protein-protein interactions in the archaeal core replisome.

Authors:  Stuart A MacNeill
Journal:  Biochem Soc Trans       Date:  2011-01       Impact factor: 5.407

4.  Replication initiation at the Escherichia coli chromosomal origin.

Authors:  Jon M Kaguni
Journal:  Curr Opin Chem Biol       Date:  2011-08-18       Impact factor: 8.822

5.  Structure and flexibility within proteins as identified through small angle X-ray scattering.

Authors:  Martin Pelikan; Greg L Hura; Michal Hammel
Journal:  Gen Physiol Biophys       Date:  2009-06       Impact factor: 1.512

6.  Primase directs the release of DnaC from DnaB.

Authors:  Magdalena Makowska-Grzyska; Jon M Kaguni
Journal:  Mol Cell       Date:  2010-01-15       Impact factor: 17.970

Review 7.  Helicases that underpin replication of protein-bound DNA in Escherichia coli.

Authors:  Peter McGlynn
Journal:  Biochem Soc Trans       Date:  2011-04       Impact factor: 5.407

8.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

9.  Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing.

Authors:  Dirk Remus; Fabienne Beuron; Gökhan Tolun; Jack D Griffith; Edward P Morris; John F X Diffley
Journal:  Cell       Date:  2009-11-05       Impact factor: 41.582

10.  The structural basis for MCM2-7 helicase activation by GINS and Cdc45.

Authors:  Alessandro Costa; Ivar Ilves; Nele Tamberg; Tatjana Petojevic; Eva Nogales; Michael R Botchan; James M Berger
Journal:  Nat Struct Mol Biol       Date:  2011-03-06       Impact factor: 15.369

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  48 in total

1.  Substitutions of Conserved Residues in the C-terminal Region of DnaC Cause Thermolability in Helicase Loading.

Authors:  Magdalena M Felczak; Jay M Sage; Katarzyna Hupert-Kocurek; Senem Aykul; Jon M Kaguni
Journal:  J Biol Chem       Date:  2016-01-04       Impact factor: 5.157

2.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

3.  Prereplication-complex formation: a molecular double take?

Authors:  Hasan Yardimci; Johannes C Walter
Journal:  Nat Struct Mol Biol       Date:  2014-01       Impact factor: 15.369

Review 4.  Replication Initiation in Bacteria.

Authors:  S Chodavarapu; J M Kaguni
Journal:  Enzymes       Date:  2016-04-20

5.  Profile of James M. Berger.

Authors:  Jennifer Viegas
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

6.  Structure and Function of the PriC DNA Replication Restart Protein.

Authors:  Sarah R Wessel; Claudia C Cornilescu; Gabriel Cornilescu; Alice Metz; Maxime Leroux; Kaifeng Hu; Steven J Sandler; John L Markley; James L Keck
Journal:  J Biol Chem       Date:  2016-07-05       Impact factor: 5.157

Review 7.  Assessing heterogeneity in oligomeric AAA+ machines.

Authors:  Tatyana A Sysoeva
Journal:  Cell Mol Life Sci       Date:  2016-09-26       Impact factor: 9.261

8.  Mechanisms of opening and closing of the bacterial replicative helicase.

Authors:  Jillian Chase; Andrew Catalano; Alex J Noble; Edward T Eng; Paul Db Olinares; Kelly Molloy; Danaya Pakotiprapha; Martin Samuels; Brian Chait; Amedee des Georges; David Jeruzalmi
Journal:  Elife       Date:  2018-12-24       Impact factor: 8.140

9.  DnaB helicase is recruited to the replication initiation complex via binding of DnaA domain I to the lateral surface of the DnaB N-terminal domain.

Authors:  Chihiro Hayashi; Erika Miyazaki; Shogo Ozaki; Yoshito Abe; Tsutomu Katayama
Journal:  J Biol Chem       Date:  2020-06-15       Impact factor: 5.157

Review 10.  Loading strategies of ring-shaped nucleic acid translocases and helicases.

Authors:  Valerie L O'Shea; James M Berger
Journal:  Curr Opin Struct Biol       Date:  2013-12-18       Impact factor: 6.809

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