Literature DB >> 31348887

Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.

Michael R Wasserman1, Grant D Schauer2, Michael E O'Donnell3, Shixin Liu4.   

Abstract

The eukaryotic replicative helicase CMG is a closed ring around double-stranded (ds)DNA at origins yet must transition to single-stranded (ss)DNA for helicase action. CMG must also handle repair intermediates, such as reversed forks that lack ssDNA. Here, using correlative single-molecule fluorescence and force microscopy, we show that CMG harbors a ssDNA gate that enables transitions between ss and dsDNA. When coupled to DNA polymerase, CMG remains on ssDNA, but when uncoupled, CMG employs this gate to traverse forked junctions onto dsDNA. Surprisingly, CMG undergoes rapid diffusion on dsDNA and can transition back onto ssDNA to nucleate a functional replisome. The gate-distinct from that between Mcm2/5 used for origin loading-is intrinsic to CMG; however, Mcm10 promotes strand passage by enhancing the affinity of CMG to DNA. This gating process may explain the dsDNA-to-ssDNA transition of CMG at origins and help preserve CMG on dsDNA during fork repair.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CMG; DNA repair; DNA replication; Mcm10; fork restart; optical tweezers; origin initiation; replisome; single-molecule fluorescence

Mesh:

Substances:

Year:  2019        PMID: 31348887      PMCID: PMC6705614          DOI: 10.1016/j.cell.2019.06.032

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  80 in total

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Authors:  G A Bauer; P M Burgers
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

2.  Overproduction and analysis of eukaryotic multiprotein complexes in Escherichia coli using a dual-vector strategy.

Authors:  Jeff Finkelstein; Edwin Antony; Manju M Hingorani; Michael O'Donnell
Journal:  Anal Biochem       Date:  2003-08-01       Impact factor: 3.365

Review 3.  The ring-shaped hexameric helicases that function at DNA replication forks.

Authors:  Michael E O'Donnell; Huilin Li
Journal:  Nat Struct Mol Biol       Date:  2018-01-29       Impact factor: 15.369

4.  The structural basis for MCM2-7 helicase activation by GINS and Cdc45.

Authors:  Alessandro Costa; Ivar Ilves; Nele Tamberg; Tatjana Petojevic; Eva Nogales; Michael R Botchan; James M Berger
Journal:  Nat Struct Mol Biol       Date:  2011-03-06       Impact factor: 15.369

5.  In vitro Assays for Eukaryotic Leading/Lagging Strand DNA Replication.

Authors:  Grant Schauer; Jeff Finkelstein; Mike O'Donnell
Journal:  Bio Protoc       Date:  2017-09-20

6.  TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO-IKK supramolecular structures.

Authors:  Nadine Tarantino; Jean-Yves Tinevez; Elizabeth Faris Crowell; Bertrand Boisson; Ricardo Henriques; Musa Mhlanga; Fabrice Agou; Alain Israël; Emmanuel Laplantine
Journal:  J Cell Biol       Date:  2014-01-20       Impact factor: 10.539

7.  A unique DNA entry gate serves for regulated loading of the eukaryotic replicative helicase MCM2-7 onto DNA.

Authors:  Stefan A Samel; Alejandra Fernández-Cid; Jingchuan Sun; Alberto Riera; Silvia Tognetti; M Carmen Herrera; Huilin Li; Christian Speck
Journal:  Genes Dev       Date:  2014-08-01       Impact factor: 11.361

8.  Replication Fork Reversal during DNA Interstrand Crosslink Repair Requires CMG Unloading.

Authors:  Ravindra Amunugama; Smaranda Willcox; R Alex Wu; Ummi B Abdullah; Afaf H El-Sagheer; Tom Brown; Peter J McHugh; Jack D Griffith; Johannes C Walter
Journal:  Cell Rep       Date:  2018-06-19       Impact factor: 9.423

9.  Copper-free click chemistry for attachment of biomolecules in magnetic tweezers.

Authors:  Jorine M Eeftens; Jaco van der Torre; Daniel R Burnham; Cees Dekker
Journal:  BMC Biophys       Date:  2015-09-25       Impact factor: 4.778

10.  Mcm10 promotes rapid isomerization of CMG-DNA for replisome bypass of lagging strand DNA blocks.

Authors:  Lance D Langston; Ryan Mayle; Grant D Schauer; Olga Yurieva; Daniel Zhang; Nina Y Yao; Roxana E Georgescu; Mike E O'Donnell
Journal:  Elife       Date:  2017-09-04       Impact factor: 8.140

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  32 in total

1.  Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Grant D Schauer; Olga Yurieva; Stefan H Mueller; Varsha Natarajan; Gurleen Kaur; Claire Maher; Callum Kay; Michael E O'Donnell; Antoine M van Oijen
Journal:  Mol Cell       Date:  2019-11-05       Impact factor: 17.970

Review 2.  Time for remodeling: SNF2-family DNA translocases in replication fork metabolism and human disease.

Authors:  Sarah A Joseph; Angelo Taglialatela; Giuseppe Leuzzi; Jen-Wei Huang; Raquel Cuella-Martin; Alberto Ciccia
Journal:  DNA Repair (Amst)       Date:  2020-08-15

3.  A Tour de Force on the Double Helix: Exploiting DNA Mechanics To Study DNA-Based Molecular Machines.

Authors:  Michael R Wasserman; Shixin Liu
Journal:  Biochemistry       Date:  2019-06-28       Impact factor: 3.162

4.  Molecular mechanism for direct actin force-sensing by α-catenin.

Authors:  Lin Mei; Santiago Espinosa de Los Reyes; Matthew J Reynolds; Rachel Leicher; Shixin Liu; Gregory M Alushin
Journal:  Elife       Date:  2020-09-24       Impact factor: 8.140

5.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

6.  Single-strand DNA breaks cause replisome disassembly.

Authors:  Kyle B Vrtis; James M Dewar; Gheorghe Chistol; R Alex Wu; Thomas G W Graham; Johannes C Walter
Journal:  Mol Cell       Date:  2021-01-22       Impact factor: 17.970

7.  CTP promotes efficient ParB-dependent DNA condensation by facilitating one-dimensional diffusion from parS.

Authors:  Francisco de Asis Balaguer; Clara Aicart-Ramos; Gemma Lm Fisher; Sara de Bragança; Eva M Martin-Cuevas; Cesar L Pastrana; Mark Simon Dillingham; Fernando Moreno-Herrero
Journal:  Elife       Date:  2021-07-12       Impact factor: 8.140

Review 8.  Mechanisms for Maintaining Eukaryotic Replisome Progression in the Presence of DNA Damage.

Authors:  Thomas A Guilliam
Journal:  Front Mol Biosci       Date:  2021-07-06

Review 9.  Towards a Structural Mechanism for Sister Chromatid Cohesion Establishment at the Eukaryotic Replication Fork.

Authors:  Sarah S Henrikus; Alessandro Costa
Journal:  Biology (Basel)       Date:  2021-05-26

10.  Generation of versatile ss-dsDNA hybrid substrates for single-molecule analysis.

Authors:  Ondrej Belan; George Moore; Artur Kaczmarczyk; Matthew D Newton; Roopesh Anand; Simon J Boulton; David S Rueda
Journal:  STAR Protoc       Date:  2021-06-11
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