Literature DB >> 26599156

High-throughput histopathological image analysis via robust cell segmentation and hashing.

Xiaofan Zhang1, Fuyong Xing2, Hai Su3, Lin Yang4, Shaoting Zhang5.   

Abstract

Computer-aided diagnosis of histopathological images usually requires to examine all cells for accurate diagnosis. Traditional computational methods may have efficiency issues when performing cell-level analysis. In this paper, we propose a robust and scalable solution to enable such analysis in a real-time fashion. Specifically, a robust segmentation method is developed to delineate cells accurately using Gaussian-based hierarchical voting and repulsive balloon model. A large-scale image retrieval approach is also designed to examine and classify each cell of a testing image by comparing it with a massive database, e.g., half-million cells extracted from the training dataset. We evaluate this proposed framework on a challenging and important clinical use case, i.e., differentiation of two types of lung cancers (the adenocarcinoma and squamous carcinoma), using thousands of lung microscopic tissue images extracted from hundreds of patients. Our method has achieved promising accuracy and running time by searching among half-million cells .
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cell segmentation; Hashing; Histopathological image analysis; Image retrieval; Large-scale

Mesh:

Year:  2015        PMID: 26599156      PMCID: PMC4679540          DOI: 10.1016/j.media.2015.10.005

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  44 in total

1.  A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks.

Authors:  Gang Lin; Umesh Adiga; Kathy Olson; John F Guzowski; Carol A Barnes; Badrinath Roysam
Journal:  Cytometry A       Date:  2003-11       Impact factor: 4.355

2.  A fully automated approach to segmentation of irregularly shaped cellular structures in EM images.

Authors:  Aurélien Lucchi; Kevin Smith; Radhakrishna Achanta; Vincent Lepetit; Pascal Fua
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

3.  Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks.

Authors:  Hongmin Cai; Xiaoyin Xu; Ju Lu; Jeff W Lichtman; S P Yung; Stephen T C Wong
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

4.  Cell segmentation using coupled level sets and graph-vertex coloring.

Authors:  Sumit K Nath; Kannappan Palaniappan; Filiz Bunyak
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

5.  Snakes, shapes, and gradient vector flow.

Authors:  C Xu; J L Prince
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

6.  Comparative analysis of methods for accurate recognition of cells through nuclei staining of Ki-67 in neuroblastoma and estrogen/progesterone status staining in breast cancer.

Authors:  Tomasz Markiewicz; Piotr Wisniewski; Stanislaw Osowski; Janusz Patera; Wojciech Kozlowski; Robert Koktysz
Journal:  Anal Quant Cytol Histol       Date:  2009-02       Impact factor: 0.302

7.  Quantitative neurite outgrowth measurement based on image segmentation with topological dependence.

Authors:  Weimiao Yu; Hwee Kuan Lee; Srivats Hariharan; Wenyu Bu; Sohail Ahmed
Journal:  Cytometry A       Date:  2009-04       Impact factor: 4.355

8.  Improved automatic detection and segmentation of cell nuclei in histopathology images.

Authors:  Yousef Al-Kofahi; Wiem Lassoued; William Lee; Badrinath Roysam
Journal:  IEEE Trans Biomed Eng       Date:  2009-10-30       Impact factor: 4.538

9.  Automatic Ki-67 counting using robust cell detection and online dictionary learning.

Authors:  Fuyong Xing; Hai Su; Janna Neltner; Lin Yang
Journal:  IEEE Trans Biomed Eng       Date:  2014-03       Impact factor: 4.538

10.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

View more
  10 in total

1.  Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality.

Authors:  Zhongyu Li; Erik Butler; Kang Li; Aidong Lu; Shuiwang Ji; Shaoting Zhang
Journal:  Neuroinformatics       Date:  2018-10

2.  Integrative Analysis of Histopathological Images and Genomic Data Predicts Clear Cell Renal Cell Carcinoma Prognosis.

Authors:  Jun Cheng; Jie Zhang; Yatong Han; Xusheng Wang; Xiufen Ye; Yuebo Meng; Anil Parwani; Zhi Han; Qianjin Feng; Kun Huang
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

Review 3.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06

4.  SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs.

Authors:  Jamil Ahmad; Muhammad Sajjad; Irfan Mehmood; Sung Wook Baik
Journal:  PLoS One       Date:  2017-08-03       Impact factor: 3.240

5.  I-AbACUS: a Reliable Software Tool for the Semi-Automatic Analysis of Invasion and Migration Transwell Assays.

Authors:  Marilisa Cortesi; Estelle Llamosas; Claire E Henry; Raani-Yogeeta A Kumaran; Benedict Ng; Janet Youkhana; Caroline E Ford
Journal:  Sci Rep       Date:  2018-02-28       Impact factor: 4.379

6.  Identification of topological features in renal tumor microenvironment associated with patient survival.

Authors:  Jun Cheng; Xiaokui Mo; Xusheng Wang; Anil Parwani; Qianjin Feng; Kun Huang
Journal:  Bioinformatics       Date:  2018-03-15       Impact factor: 6.937

7.  Automated Individualization of Size-Varying and Touching Neurons in Macaque Cerebral Microscopic Images.

Authors:  Zhenzhen You; Yaël Balbastre; Clément Bouvier; Anne-Sophie Hérard; Pauline Gipchtein; Philippe Hantraye; Caroline Jan; Nicolas Souedet; Thierry Delzescaux
Journal:  Front Neuroanat       Date:  2019-12-17       Impact factor: 3.856

8.  Segmentation of HE-stained meningioma pathological images based on pseudo-labels.

Authors:  Chongshu Wu; Jing Zhong; Lin Lin; Yanping Chen; Yunjing Xue; Peng Shi
Journal:  PLoS One       Date:  2022-02-04       Impact factor: 3.240

9.  Out-of-Sample Extrapolation utilizing Semi-Supervised Manifold Learning (OSE-SSL): Content Based Image Retrieval for Histopathology Images.

Authors:  Rachel Sparks; Anant Madabhushi
Journal:  Sci Rep       Date:  2016-06-06       Impact factor: 4.379

10.  Integrative Models of Histopathological Image Features and Omics Data Predict Survival in Head and Neck Squamous Cell Carcinoma.

Authors:  Hao Zeng; Linyan Chen; Yeqian Huang; Yuling Luo; Xuelei Ma
Journal:  Front Cell Dev Biol       Date:  2020-10-29
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.