Literature DB >> 24778210

Histone demethylase KDM5B is a key regulator of genome stability.

Xin Li1, Ling Liu1, Shangda Yang1, Nan Song1, Xing Zhou1, Jie Gao1, Na Yu1, Lin Shan1, Qian Wang1, Jing Liang2, Chenghao Xuan1, Yan Wang1, Yongfeng Shang3, Lei Shi4.   

Abstract

Maintenance of genomic stability is essential for normal organismal development and is vital to prevent diseases such as cancer. As genetic information is packaged into chromatin, it has become increasingly clear that the chromatin environment plays an important role in DNA damage response. However, how DNA repair is controlled by epigenetic mechanisms is not fully understood. Here we report the identification and characterization of lysine-specific histone demethylase 5B (KDM5B), a member of the JmjC domain-containing histone demethylases, as an important player in multiple aspects of DNA double-strand break (DSB) response in human cells. We found that KDM5B becomes enriched in DNA-damage sites after ironizing radiation and endonuclease treatment in a poly(ADP ribose) polymerase 1- and histone variant macroH2A1.1-dependent manner. We showed that KDM5B is required for efficient DSB repair and for the recruitment of Ku70 and BRCA1, the essential component of nonhomologous end-joining and homologous recombination, respectively. Significantly, KDM5B deficiency disengages the DNA repair process, promotes spontaneous DNA damage, activates p53 signaling, and sensitizes cells to genotoxic insults. Our results suggest that KDM5B is a bona fide DNA damage response protein and indicate that KDM5B is an important genome caretaker and a critical regulator of genome stability, adding to the understanding of the roles of epigenetics in the maintenance of genetic fidelity.

Entities:  

Keywords:  chromatin modification; genome maintenance; histone methylation

Mesh:

Substances:

Year:  2014        PMID: 24778210      PMCID: PMC4024858          DOI: 10.1073/pnas.1324036111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

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Review 2.  Multiple facets of the unique histone variant macroH2A: from genomics to cell biology.

Authors:  Matthew J Gamble; W Lee Kraus
Journal:  Cell Cycle       Date:  2010-07-01       Impact factor: 4.534

Review 3.  Chromatin dynamics in DNA double-strand break repair.

Authors:  Lei Shi; Philipp Oberdoerffer
Journal:  Biochim Biophys Acta       Date:  2012-01-17

4.  SIRT6 promotes DNA repair under stress by activating PARP1.

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Journal:  Science       Date:  2011-06-17       Impact factor: 47.728

5.  A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage.

Authors:  Danny M Chou; Britt Adamson; Noah E Dephoure; Xu Tan; Amanda C Nottke; Kristen E Hurov; Steven P Gygi; Monica P Colaiácovo; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

Review 6.  Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modifications.

Authors:  Sophie E Polo; Stephen P Jackson
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

7.  Regulation of DNA-damage responses and cell-cycle progression by the chromatin remodelling factor CHD4.

Authors:  Sophie E Polo; Abderrahmane Kaidi; Linda Baskcomb; Yaron Galanty; Stephen P Jackson
Journal:  EMBO J       Date:  2010-08-06       Impact factor: 11.598

8.  HDACs link the DNA damage response, processing of double-strand breaks and autophagy.

Authors:  Thomas Robert; Fabio Vanoli; Irene Chiolo; Ghadeer Shubassi; Kara A Bernstein; Rodney Rothstein; Oronza A Botrugno; Dario Parazzoli; Amanda Oldani; Saverio Minucci; Marco Foiani
Journal:  Nature       Date:  2011-03-03       Impact factor: 49.962

9.  ATM damage response and XLF repair factor are functionally redundant in joining DNA breaks.

Authors:  Shan Zha; Chunguang Guo; Cristian Boboila; Valentyn Oksenych; Hwei-Ling Cheng; Yu Zhang; Duane R Wesemann; Grace Yuen; Harin Patel; Peter H Goff; Richard L Dubois; Frederick W Alt
Journal:  Nature       Date:  2010-12-15       Impact factor: 49.962

10.  MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites.

Authors:  Huadong Pei; Lindsey Zhang; Kuntian Luo; Yuxin Qin; Marta Chesi; Frances Fei; P Leif Bergsagel; Liewei Wang; Zhongsheng You; Zhenkun Lou
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

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  61 in total

Review 1.  Patching Broken DNA: Nucleosome Dynamics and the Repair of DNA Breaks.

Authors:  Ozge Gursoy-Yuzugullu; Nealia House; Brendan D Price
Journal:  J Mol Biol       Date:  2015-11-26       Impact factor: 5.469

Review 2.  JARID1 Histone Demethylases: Emerging Targets in Cancer.

Authors:  Kayla M Harmeyer; Nicole D Facompre; Meenhard Herlyn; Devraj Basu
Journal:  Trends Cancer       Date:  2017-09-12

Review 3.  Preserving genome integrity and function: the DNA damage response and histone modifications.

Authors:  Jae Jin Kim; Seo Yun Lee; Kyle M Miller
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-06-04       Impact factor: 8.250

4.  Age-associated DNA methylation changes in naive CD4+ T cells suggest an evolving autoimmune epigenotype in aging T cells.

Authors:  Mikhail G Dozmorov; Patrick Coit; Kathleen Maksimowicz-McKinnon; Amr H Sawalha
Journal:  Epigenomics       Date:  2017-03-21       Impact factor: 4.778

5.  From biological mechanisms to clinical implications: the role of mineral dust-induced gene in lung cancers.

Authors:  Jianjun Zhang; Hongwen Zhao
Journal:  J Thorac Dis       Date:  2017-05       Impact factor: 2.895

6.  Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.

Authors:  Michael W Lutz; Ramon Casanova; Santiago Saldana; Maragatha Kuchibhatla; Brenda L Plassman; Kathleen M Hayden
Journal:  Neurobiol Aging       Date:  2019-03-06       Impact factor: 4.673

Review 7.  Disrupted intricacy of histone H3K4 methylation in neurodevelopmental disorders.

Authors:  Christina N Vallianatos; Shigeki Iwase
Journal:  Epigenomics       Date:  2015       Impact factor: 4.778

8.  Double duty: ZMYND8 in the DNA damage response and cancer.

Authors:  Fade Gong; Kyle M Miller
Journal:  Cell Cycle       Date:  2018-03-19       Impact factor: 4.534

9.  KDM5B Is Essential for the Hyperactivation of PI3K/AKT Signaling in Prostate Tumorigenesis.

Authors:  Guoliang Li; Thanigaivelan Kanagasabai; Wenfu Lu; Mike R Zou; Shang-Min Zhang; Sherly I Celada; Michael G Izban; Qi Liu; Tao Lu; Billy R Ballard; Xinchun Zhou; Samuel E Adunyah; Robert J Matusik; Qin Yan; Zhenbang Chen
Journal:  Cancer Res       Date:  2020-08-31       Impact factor: 12.701

10.  Stabilization of histone demethylase PHF8 by USP7 promotes breast carcinogenesis.

Authors:  Qian Wang; Shuai Ma; Nan Song; Xin Li; Ling Liu; Shangda Yang; Xiang Ding; Lin Shan; Xing Zhou; Dongxue Su; Yue Wang; Qi Zhang; Xinhua Liu; Na Yu; Kai Zhang; Yongfeng Shang; Zhi Yao; Lei Shi
Journal:  J Clin Invest       Date:  2016-05-16       Impact factor: 14.808

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